Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 3.3e-53 211.5 108 100.0
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 3.5e-39 164.9 104 76.9
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 9.3e-32 140.2 96 72.9
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 9.3e-32 140.2 91 74.7
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.6e-31 139.4 93 73.1
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.6e-31 139.4 93 69.9
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 2.1e-31 139.0 97 68.0
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 7.9e-31 137.1 93 71.0
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.0e-30 136.7 91 71.4
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.0e-30 136.7 93 71.0
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 1.4e-30 136.3 80 80.0
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 2.3e-30 135.6 94 72.3
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 2.3e-30 135.6 91 71.4
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 2.3e-30 135.6 93 69.9
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 3.0e-30 135.2 93 71.0
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 3.0e-30 135.2 89 67.4
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 5.1e-30 134.4 92 69.6
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 5.1e-30 134.4 98 71.4
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 6.7e-30 134.0 93 66.7
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.7e-30 134.0 91 69.2
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 6.7e-30 134.0 86 77.9
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 8.8e-30 133.7 93 71.0
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.8e-30 133.7 74 85.1
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.8e-30 133.7 74 85.1
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 8.8e-30 133.7 93 71.0
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 8.8e-30 133.7 93 69.9
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 1.1e-29 133.3 98 68.4
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 1.5e-29 132.9 74 85.1
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.5e-29 132.9 93 65.6
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 1.5e-29 132.9 104 64.4
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 1.5e-29 132.9 102 67.6
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.5e-29 132.9 92 71.7
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 2.5e-29 132.1 70 87.1
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.5e-29 132.1 91 69.2
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 2.5e-29 132.1 95 68.4
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 3.3e-29 131.7 98 67.3
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 3.3e-29 131.7 91 68.1
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 5.7e-29 131.0 94 68.1
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 7.4e-29 130.6 92 70.7
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 9.7e-29 130.2 92 68.5
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 9.7e-29 130.2 92 68.5
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 9.7e-29 130.2 72 81.9
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 9.7e-29 130.2 93 66.7
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 9.7e-29 130.2 104 63.5
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 1.7e-28 129.4 73 79.5
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 2.2e-28 129.0 107 63.6
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.8e-28 128.6 84 72.6
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 2.8e-28 128.6 86 74.4
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 3.7e-28 128.3 86 74.4
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 4.8e-28 127.9 71 81.7
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 6.3e-28 127.5 92 66.3
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 8.2e-28 127.1 88 70.5
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 1.1e-27 126.7 74 79.7
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 1.1e-27 126.7 92 68.5
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.1e-27 126.7 84 71.4
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.1e-27 126.7 91 67.0
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.4e-27 126.3 74 77.0
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.8e-27 125.9 93 67.7
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 2.4e-27 125.6 92 66.3
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 2.4e-27 125.6 107 64.5
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 3.1e-27 125.2 73 78.1
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 3.1e-27 125.2 73 78.1
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 3.1e-27 125.2 74 78.4
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 3.1e-27 125.2 74 78.4
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 3.1e-27 125.2 74 78.4
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 3.1e-27 125.2 73 78.1
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 4.1e-27 124.8 94 63.8
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 5.3e-27 124.4 96 63.5
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 5.3e-27 124.4 96 63.5
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 6.9e-27 124.0 74 77.0
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 6.9e-27 124.0 74 77.0
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 6.9e-27 124.0 74 77.0
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 6.9e-27 124.0 74 77.0
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 9.1e-27 123.6 93 65.6
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 1.2e-26 123.2 74 77.0
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.5e-26 122.9 93 71.0
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.5e-26 122.9 76 71.1
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 2.0e-26 122.5 73 76.7
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 2.0e-26 122.5 71 80.3
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 2.6e-26 122.1 74 74.3
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 2.6e-26 122.1 74 74.3
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 2.6e-26 122.1 87 70.1
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 3.4e-26 121.7 73 76.7
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 3.4e-26 121.7 75 73.3
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 4.5e-26 121.3 92 65.2
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.0e-25 120.2 84 65.5
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.5e-25 117.5 91 63.7
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 8.5e-25 117.1 103 61.2
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 5.5e-24 114.4 81 66.7
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 2.1e-23 112.5 72 72.2
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 3.6e-23 111.7 103 58.3
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 1.0e-22 110.2 91 58.2
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 2.3e-22 109.0 130 47.7
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 1.1e-21 106.7 100 53.0
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 4.4e-21 104.8 72 65.3
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.3e-20 103.2 81 61.7
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.3e-20 103.2 83 62.7
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 3.7e-20 101.7 69 60.9
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.4e-19 99.0 56 82.1
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 4.1e-19 98.2 76 64.5
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 1.3e-17 93.2 92 55.4
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 2.2e-17 92.4 82 52.4
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 8.5e-17 90.5 69 53.6
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 3.2e-16 88.6 64 60.9
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 4.2e-16 88.2 70 50.0
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.1e-11 73.6 59 61.0
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 3.5e-10 68.6 58 58.6
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.7e-09 66.2 37 81.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 2.2e-09 65.9 39 74.4
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 1.6e-07 59.7 34 79.4
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 2.7e-07 58.9 40 70.0
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 1.8e-06 56.2 52 55.8
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 4.0e-06 55.1 38 68.4
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 8.8e-06 53.9 53 54.7


User provided reference genes

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