Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.3e-90 335.5 166 100.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.8e-18 96.7 95 55.8
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.9e-16 89.4 166 37.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.9e-16 89.4 166 37.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.9e-16 89.4 166 37.3
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 3.8e-16 89.0 44 90.9
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 5.0e-16 88.6 44 90.9
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.9e-15 86.7 92 50.0
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 3.2e-15 85.9 80 56.2
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.2e-15 85.9 44 84.1
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.2e-15 85.9 55 69.1
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 3.2e-15 85.9 56 67.9
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 4.2e-15 85.5 54 70.4
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.2e-15 85.5 44 86.4
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 4.2e-15 85.5 44 86.4
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.5e-15 85.1 50 80.0
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 5.5e-15 85.1 44 84.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 5.5e-15 85.1 44 84.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 5.5e-15 85.1 44 84.1
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 5.5e-15 85.1 44 84.1
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 5.5e-15 85.1 44 84.1
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 7.2e-15 84.7 57 66.7
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 9.4e-15 84.3 44 84.1
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 9.4e-15 84.3 44 81.8
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 9.4e-15 84.3 44 84.1
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.2e-14 84.0 146 39.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.2e-14 84.0 47 80.9
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.2e-14 84.0 44 81.8
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.6e-14 83.6 44 79.5
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.6e-14 83.6 44 84.1
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.6e-14 83.6 44 86.4
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.1e-14 83.2 44 81.8
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.1e-14 83.2 44 84.1
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 2.7e-14 82.8 44 79.5
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 2.7e-14 82.8 50 74.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.7e-14 82.8 44 84.1
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.7e-14 82.8 46 78.3
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 3.6e-14 82.4 44 81.8
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 3.6e-14 82.4 93 46.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.6e-14 82.4 44 81.8
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.6e-14 82.4 46 80.4
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 3.6e-14 82.4 46 80.4
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.6e-14 82.4 44 81.8
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 4.6e-14 82.0 50 78.0
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.6e-14 82.0 93 47.3
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.6e-14 82.0 53 69.8
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.6e-14 82.0 53 69.8
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 4.6e-14 82.0 43 83.7
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 4.6e-14 82.0 43 83.7
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 6.1e-14 81.6 49 73.5
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.9e-14 81.3 44 81.8
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 7.9e-14 81.3 44 81.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 7.9e-14 81.3 44 79.5
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.9e-14 81.3 44 81.8
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 7.9e-14 81.3 44 79.5
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.0e-13 80.9 44 77.3
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.0e-13 80.9 44 79.5
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.0e-13 80.9 75 54.7
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.4e-13 80.5 44 77.3
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.4e-13 80.5 44 77.3
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.4e-13 80.5 44 77.3
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.4e-13 80.5 44 77.3
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.4e-13 80.5 43 81.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.8e-13 80.1 86 51.2
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.8e-13 80.1 44 75.0
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.8e-13 80.1 44 79.5
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-13 80.1 47 74.5
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 2.3e-13 79.7 44 77.3
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.0e-13 79.3 44 77.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 3.0e-13 79.3 44 75.0
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 3.0e-13 79.3 44 75.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.0e-13 79.3 44 79.5
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.0e-13 79.3 42 83.3
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 3.9e-13 79.0 44 77.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.1e-13 78.6 49 73.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 5.1e-13 78.6 143 37.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 5.1e-13 78.6 44 75.0
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 6.7e-13 78.2 43 79.1
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.7e-13 78.2 43 79.1
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.7e-13 78.2 43 79.1
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 8.8e-13 77.8 44 75.0
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 8.8e-13 77.8 44 77.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-12 77.4 54 66.7
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-12 77.4 54 66.7
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.1e-12 77.4 44 75.0
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.1e-12 77.4 44 75.0
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.1e-12 77.4 44 77.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.1e-12 77.4 61 59.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.5e-12 77.0 44 75.0
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.5e-12 77.0 43 76.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.5e-12 77.0 44 72.7
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.5e-12 76.3 42 78.6
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.5e-12 76.3 42 78.6
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.5e-12 76.3 44 75.0
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.5e-12 76.3 55 65.5
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.5e-12 76.3 55 65.5
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 2.5e-12 76.3 43 74.4
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 3.3e-12 75.9 43 74.4
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.3e-12 75.9 44 68.2
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 4.3e-12 75.5 43 74.4
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.7e-12 75.1 43 76.7
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.7e-11 73.6 44 72.7
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 3.7e-11 72.4 44 68.2
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 3.7e-11 72.4 43 72.1
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.7e-11 72.4 47 63.8
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.8e-11 72.0 42 73.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 4.8e-11 72.0 47 63.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 6.3e-11 71.6 59 57.6
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.1e-10 70.9 44 72.7
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 6.9e-10 68.2 44 75.0
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 6.9e-10 68.2 44 75.0
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 6.9e-10 68.2 44 75.0
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 4.5e-09 65.5 36 77.8
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.3e-08 63.9 48 58.3
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 9.4e-07 57.8 34 79.4


User provided reference genes

Program Settings