Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 0.0e+00 1204.9 590 100.0
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 6.2e-279 963.8 631 75.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.4e-278 962.6 647 74.5
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.4e-261 904.8 650 68.8
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.1e-234 815.8 649 64.1
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 7.2e-227 790.8 649 60.7
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 7.2e-227 790.8 649 61.0
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 4.1e-222 775.0 653 59.3
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.2e-219 765.4 642 60.7
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 4.7e-218 761.5 653 58.5
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.0e-217 760.4 649 58.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.4e-217 760.0 651 58.5
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.4e-217 760.0 645 58.8
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 6.8e-217 757.7 644 59.0
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.5e-216 756.5 645 58.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.8e-215 752.3 607 60.8
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 3.7e-215 751.9 652 57.8
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 9.1e-214 747.3 648 57.9
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 5.9e-213 744.6 671 56.9
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.9e-213 744.6 647 58.1
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 7.7e-213 744.2 648 57.7
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.7e-212 743.0 651 58.1
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.9e-212 742.3 645 57.8
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 3.8e-212 741.9 653 56.5
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.2e-211 738.4 644 57.5
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 7.2e-211 737.6 641 58.3
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.2e-210 736.9 650 57.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.1e-210 736.1 644 57.9
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.7e-210 734.9 644 58.1
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.0e-209 733.8 644 57.3
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.0e-209 733.8 648 57.4
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.0e-209 733.8 648 57.4
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.0e-209 732.3 648 57.7
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 3.0e-209 732.3 645 57.4
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 6.8e-209 731.1 644 58.1
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.2e-208 730.3 645 57.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.2e-208 730.3 646 56.5
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.6e-208 729.2 644 57.0
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.6e-208 729.2 646 57.1
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.7e-208 728.0 647 56.6
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.7e-208 728.0 647 56.6
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 4.9e-207 724.9 645 55.7
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 8.3e-207 724.2 646 56.3
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 8.3e-207 724.2 648 56.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 3.1e-206 722.2 644 56.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.1e-206 722.2 649 55.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 9.2e-206 720.7 644 56.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 9.2e-206 720.7 649 56.4
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 4.5e-205 718.4 645 56.6
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.0e-204 717.2 657 56.6
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 2.3e-204 716.1 651 56.2
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 6.6e-204 714.5 644 56.8
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 6.6e-204 714.5 645 57.2
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.5e-203 713.4 648 54.3
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 3.3e-203 712.2 649 55.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 2.1e-202 709.5 651 56.2
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 3.6e-202 708.8 651 56.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 6.1e-202 708.0 643 56.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.0e-201 707.2 658 55.8
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.0e-201 707.2 644 56.4
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.4e-201 706.8 651 55.1
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 2.3e-201 706.1 645 55.2
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 5.2e-201 704.9 649 56.4
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 6.8e-201 704.5 656 56.7
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 6.8e-201 704.5 651 56.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.2e-200 703.7 630 57.3
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.2e-200 703.7 646 55.4
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.6e-200 702.6 646 55.3
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.3e-199 700.3 650 56.5
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 3.2e-198 695.7 647 55.2
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 5.4e-198 694.9 656 54.4
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 4.6e-197 691.8 657 54.2
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 4.6e-197 691.8 613 56.8
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 7.8e-197 691.0 643 56.6
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.7e-196 689.9 621 57.0
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 2.3e-193 679.5 658 53.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 4.0e-193 678.7 651 53.9
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 3.7e-191 672.2 650 52.8
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.6e-189 666.8 611 54.5
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 4.6e-189 665.2 649 52.1
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 3.6e-186 655.6 538 60.0
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 6.2e-186 654.8 647 49.9
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.9e-182 643.3 647 51.5
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 3.2e-182 642.5 666 52.0
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 2.3e-172 609.8 645 48.8
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.5e-168 597.0 568 53.0
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.0e-156 556.2 584 47.9
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 4.0e-153 545.8 535 53.6
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 6.9e-153 545.0 662 46.2
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.2e-144 517.7 618 48.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 6.5e-143 511.9 486 54.5
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.1e-137 494.6 573 47.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 3.4e-136 489.6 509 48.7
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 7.4e-131 471.9 657 41.9
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 1.4e-129 467.6 653 40.1
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.5e-115 421.0 636 39.9
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 5.7e-115 419.1 620 39.7
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 5.0e-111 406.0 476 46.6
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 5.7e-107 392.5 204 87.7
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.9e-103 380.2 547 41.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 8.0e-93 345.5 385 46.0
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-92 344.7 178 85.4
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.0e-88 330.9 438 40.9
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 3.4e-83 313.5 353 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.0e-80 304.3 576 36.1
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.0e-79 299.7 197 70.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 9.5e-78 295.4 346 46.0
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.5e-75 288.1 305 51.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 6.6e-71 272.7 477 36.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 7.1e-57 226.1 273 42.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.9e-55 220.3 170 63.5
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 4.7e-53 213.4 106 89.6
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.1e-52 210.7 104 90.4
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 5.3e-44 183.3 223 40.8
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 6.9e-36 156.4 200 41.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.9e-34 150.2 185 45.4
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 9.3e-33 146.0 137 56.2
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 9.0e-28 129.4 86 70.9
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.5e-26 123.2 113 58.4
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.5e-25 121.3 58 87.9
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.2e-24 119.0 83 65.1
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.7e-23 113.2 102 53.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 3.2e-17 94.4 72 59.7
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 4.2e-17 94.0 427 28.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.4e-15 89.0 76 56.6
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 2.3e-15 88.2 76 56.6
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.0e-15 87.8 62 66.1
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 3.0e-15 87.8 76 55.3
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.1e-14 85.9 76 55.3
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.5e-14 85.5 76 53.9
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 9.7e-14 82.8 76 53.9
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 4.5e-11 73.9 91 46.2
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.3e-10 72.4 85 45.9
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.9e-09 68.6 111 39.6
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 7.2e-09 66.6 96 42.7
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 6.7e-07 60.1 117 29.1


User provided reference genes

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