Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.1e-84 316.6 157 100.0
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 7.5e-30 134.4 166 48.8
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.6e-27 126.7 125 56.0
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.2e-26 122.9 165 46.1
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.0e-23 112.5 150 44.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 2.2e-21 106.3 138 47.1
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 2.8e-21 105.9 158 40.5
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.8e-21 105.9 146 45.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.8e-21 105.1 150 43.3
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 8.3e-21 104.4 139 45.3
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.1e-20 104.0 157 40.1
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.4e-20 102.8 140 45.0
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.1e-20 102.4 159 37.7
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 5.4e-20 101.7 146 42.5
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.6e-19 100.1 150 42.0
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.6e-19 100.1 148 41.9
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.0e-19 99.8 155 40.0
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.0e-19 99.8 151 40.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.7e-19 99.4 151 43.0
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.5e-19 98.6 148 41.2
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.5e-19 98.6 148 41.2
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 4.5e-19 98.6 152 43.4
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.5e-19 98.6 154 44.2
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.3e-18 97.1 147 42.2
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.7e-18 96.7 148 43.2
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.7e-18 96.7 155 42.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.7e-18 96.7 160 39.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.7e-18 96.7 135 44.4
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.7e-18 96.7 115 47.8
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.7e-18 96.7 137 43.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.3e-18 96.3 160 38.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.3e-18 96.3 117 45.3
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.8e-18 95.5 155 39.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.8e-18 95.5 152 38.8
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 3.8e-18 95.5 145 44.1
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.0e-18 95.1 124 42.7
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.0e-18 95.1 151 41.7
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 6.5e-18 94.7 124 42.7
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 6.5e-18 94.7 153 41.8
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 8.6e-18 94.4 139 44.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 8.6e-18 94.4 152 42.1
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.1e-17 94.0 148 39.9
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.5e-17 93.6 143 41.3
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.5e-17 93.6 137 43.1
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.5e-17 93.6 152 42.1
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.9e-17 93.2 161 39.8
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.9e-17 93.2 146 44.5
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.9e-17 93.2 156 39.1
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.5e-17 92.8 139 43.9
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.3e-17 92.4 143 41.3
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 3.3e-17 92.4 142 39.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.3e-17 92.4 159 42.1
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 4.2e-17 92.0 142 43.0
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 5.5e-17 91.7 120 42.5
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 5.5e-17 91.7 120 42.5
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.2e-17 91.3 143 40.6
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 9.5e-17 90.9 134 39.6
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 9.5e-17 90.9 122 44.3
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.5e-17 90.9 144 43.1
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.5e-17 90.9 136 42.6
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.2e-16 90.5 152 39.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.6e-16 90.1 137 42.3
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.6e-16 90.1 151 39.7
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 2.8e-16 89.4 160 39.4
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.6e-16 89.0 131 45.0
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.7e-16 88.6 149 38.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 4.7e-16 88.6 129 48.1
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 4.7e-16 88.6 159 39.0
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 4.7e-16 88.6 140 40.7
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.0e-15 87.4 141 39.0
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 1.4e-15 87.0 122 42.6
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.3e-15 86.3 162 38.3
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.3e-15 86.3 156 37.2
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 3.0e-15 85.9 158 36.1
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 4.0e-15 85.5 116 42.2
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.2e-15 85.1 122 41.8
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 8.9e-15 84.3 133 40.6
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 8.9e-15 84.3 144 41.0
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-14 84.0 133 40.6
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.5e-14 83.6 150 36.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.5e-14 83.6 121 41.3
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.5e-14 83.6 135 37.0
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.6e-14 82.8 141 41.1
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.6e-14 82.8 133 39.8
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.6e-14 82.8 133 39.8
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.6e-14 82.8 157 36.3
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.6e-14 82.8 145 42.1
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.6e-14 82.8 156 34.6
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 3.4e-14 82.4 135 38.5
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.4e-14 82.4 136 40.4
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.4e-14 82.0 149 36.9
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 5.7e-14 81.6 102 48.0
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 7.5e-14 81.3 141 40.4
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 7.5e-14 81.3 133 39.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 9.8e-14 80.9 146 41.1
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 9.8e-14 80.9 134 39.6
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 9.8e-14 80.9 153 39.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-13 80.5 136 40.4
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-13 80.5 135 39.3
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.3e-13 80.5 135 39.3
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-13 80.5 139 36.0
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.3e-13 80.5 136 36.0
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.2e-13 79.7 127 38.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.2e-13 79.7 149 40.3
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.2e-13 79.7 136 36.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.8e-13 79.3 139 41.0
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-13 79.3 139 41.0
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.8e-13 79.3 139 41.0
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 2.8e-13 79.3 146 37.7
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.8e-13 79.3 152 32.9
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 3.7e-13 79.0 135 38.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 4.9e-13 78.6 146 43.2
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 4.9e-13 78.6 135 38.5
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 4.9e-13 78.6 144 36.1
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 4.9e-13 78.6 140 35.0
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 6.3e-13 78.2 146 43.2
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 8.3e-13 77.8 117 42.7
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.1e-12 77.4 137 38.0
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-12 77.4 155 34.2
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.1e-12 75.5 153 32.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 5.4e-12 75.1 138 35.5
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 7.0e-12 74.7 157 35.0
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 9.2e-12 74.3 134 35.8
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 9.2e-12 74.3 134 35.8
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.7e-11 72.8 152 42.1
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.7e-10 70.1 95 42.1
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.9e-10 69.3 113 42.5
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.9e-10 69.3 148 35.8
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.5e-09 67.0 147 33.3
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.3e-09 65.9 116 35.3
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 4.7e-08 62.0 100 37.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.7e-08 62.0 151 33.8
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 6.1e-08 61.6 109 34.9
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 8.0e-08 61.2 73 47.9
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 1.0e-07 60.8 126 37.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.3e-07 59.7 137 30.7
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 2.3e-07 59.7 130 34.6
Os01g0106600 Oryza sativa ssp. japonica HOM05D041344 ORTHO05D037183 6.8e-07 58.2 109 36.7
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 8.9e-07 57.8 152 34.2
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 8.9e-07 57.8 144 30.6
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 8.9e-07 57.8 130 33.8
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.5e-06 57.0 45 60.0
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.6e-06 56.2 118 35.6
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.6e-06 56.2 105 39.0
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.6e-06 56.2 114 32.5
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 7.5e-06 54.7 133 30.8
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.5e-06 54.7 32 71.9
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 9.8e-06 54.3 152 29.6


User provided reference genes

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