Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 2.3e-260 901.7 472 100.0
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 6.1e-168 594.7 503 66.6
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 1.1e-164 583.9 521 63.5
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 5.7e-150 535.0 421 70.1
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 1.7e-146 523.5 501 58.3
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 5.2e-143 511.9 492 60.0
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 6.7e-143 511.5 502 60.0
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 1.2e-142 510.8 499 57.5
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 3.3e-142 509.2 492 59.8
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 2.2e-141 506.5 491 57.0
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 4.8e-141 505.4 440 63.2
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 1.4e-140 503.8 438 61.9
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 1.4e-140 503.8 500 57.0
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 4.1e-140 502.3 503 58.6
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 7.0e-140 501.5 466 59.9
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 9.1e-140 501.1 486 58.2
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 1.6e-139 500.4 491 56.0
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.3e-138 497.3 472 57.6
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 2.2e-138 496.5 494 55.7
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 5.0e-138 495.4 445 60.9
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 8.5e-138 494.6 494 56.9
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.5e-137 493.8 496 56.9
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 5.5e-137 491.9 488 56.8
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 7.2e-137 491.5 444 61.0
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 2.1e-136 490.0 492 57.1
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 3.6e-136 489.2 441 61.9
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 6.1e-136 488.4 433 60.5
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.0e-135 487.6 501 56.9
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 1.4e-135 487.3 432 60.4
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.8e-135 486.9 493 54.4
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 3.0e-135 486.1 437 61.1
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 4.0e-135 485.7 501 55.7
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 5.2e-135 485.3 497 57.3
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 8.8e-135 484.6 495 54.9
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 2.6e-134 483.0 496 56.9
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 2.2e-133 479.9 417 61.9
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.8e-133 479.6 451 58.3
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 4.8e-133 478.8 499 55.3
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 4.8e-133 478.8 438 61.0
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 8.3e-133 478.0 489 55.0
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.4e-132 477.2 451 58.1
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 1.8e-132 476.9 515 52.2
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 1.8e-132 476.9 438 60.0
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 2.4e-132 476.5 493 54.2
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 2.4e-132 476.5 499 54.3
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 9.1e-132 474.6 502 54.6
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 5.0e-130 468.8 497 56.7
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 1.5e-129 467.2 497 53.3
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 1.9e-129 466.8 495 53.9
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 3.3e-129 466.1 503 55.3
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 7.2e-129 464.9 496 56.9
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 2.1e-128 463.4 494 54.0
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 2.8e-128 463.0 433 58.0
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 2.8e-128 463.0 441 57.4
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.0e-128 461.5 432 59.5
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 8.0e-128 461.5 502 52.4
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 4.0e-127 459.1 540 50.2
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 8.9e-127 458.0 500 53.2
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 8.9e-127 458.0 433 58.2
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 8.9e-127 458.0 433 56.8
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.6e-126 456.4 488 53.5
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 7.5e-126 454.9 433 56.4
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 3.7e-125 452.6 510 54.5
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 6.3e-125 451.8 430 58.1
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 6.3e-125 451.8 430 58.1
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 1.4e-124 450.7 441 55.8
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 3.1e-124 449.5 490 53.1
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 2.0e-123 446.8 430 57.2
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 3.5e-123 446.0 429 57.1
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 4.5e-123 445.7 455 53.6
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 7.8e-123 444.9 466 54.5
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 1.0e-122 444.5 490 52.0
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 2.3e-122 443.4 430 57.0
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.9e-122 443.0 433 57.0
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 8.6e-122 441.4 429 56.9
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 5.6e-121 438.7 417 58.5
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 4.7e-120 435.6 488 53.7
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 2.3e-119 433.3 432 55.6
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 4.0e-119 432.6 404 58.7
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 5.8e-118 428.7 405 57.3
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.1e-116 424.5 473 51.8
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 2.1e-99 367.1 344 58.7
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 2.3e-98 363.6 349 57.3
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 5.1e-98 362.5 484 47.1
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 3.4e-94 349.7 356 55.9
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 1.6e-91 340.9 306 58.5
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 9.0e-87 325.1 326 54.9
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 2.6e-86 323.6 325 51.1
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 6.6e-82 308.9 318 54.4
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.8e-80 303.5 501 40.1
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.5e-78 297.7 513 38.6
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 1.3e-77 294.7 284 55.6
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 6.4e-77 292.4 330 51.2
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.1e-76 291.6 214 70.1
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 1.2e-75 288.1 316 50.9
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 3.5e-75 286.6 205 71.2
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 2.3e-74 283.9 244 63.9
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 4.8e-72 276.2 210 68.1
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.3e-66 257.3 250 58.0
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 6.7e-66 255.8 273 50.5
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 1.2e-59 235.0 289 49.5
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.9e-52 211.1 199 57.3
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 3.2e-44 183.7 190 50.0
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 5.1e-42 176.4 194 49.5
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 3.6e-27 127.1 311 36.0
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 6.1e-27 126.3 94 68.1
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 6.1e-27 126.3 94 68.1
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 2.0e-25 121.3 96 62.5
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 6.3e-24 116.3 72 76.4
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 5.0e-21 106.7 110 56.4
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 8.5e-21 105.9 193 40.4
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 8.0e-19 99.4 73 72.6
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 8.0e-19 99.4 180 33.3
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 2.3e-18 97.8 98 48.0
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 2.3e-18 97.8 98 49.0
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 7.5e-17 92.8 55 78.2
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 7.5e-17 92.8 112 52.7
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 4.1e-15 87.0 325 26.5
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 1.3e-13 82.0 48 79.2
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 1.9e-12 78.2 41 92.7
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 5.5e-12 76.6 58 60.3
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 2.8e-11 74.3 43 76.7
AUR62040423 Chenopodium quinoa HOM05D000107 ORTHO05D000062 5.2e-10 70.1 37 81.1
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 7.5e-09 66.2 71 54.9
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.3e-08 65.5 44 75.0
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 4.9e-08 63.5 47 63.8
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.1e-07 62.4 84 40.5
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 1.4e-07 62.0 41 65.9
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 1.6e-06 58.5 337 22.6
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 2.0e-06 58.2 337 21.4
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.0e-06 58.2 337 21.4
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.0e-06 58.2 337 21.4
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 2.0e-06 58.2 337 21.4


User provided reference genes

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