Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.9e-81 305.8 161 100.0
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.2e-37 159.5 160 57.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 7.1e-36 154.5 163 57.7
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 5.1e-34 148.3 93 71.0
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.5e-33 146.7 124 65.3
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.2e-29 132.9 134 53.7
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.2e-29 132.9 134 54.5
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.2e-29 132.9 134 54.5
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.4e-28 130.2 113 54.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 5.5e-28 128.3 130 50.8
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.6e-27 126.7 163 47.2
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 2.1e-27 126.3 109 56.9
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 3.6e-27 125.6 157 48.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 7.9e-27 124.4 175 46.9
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 7.9e-27 124.4 129 51.9
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.3e-26 122.9 144 46.5
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 3.9e-26 122.1 111 60.4
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 3.9e-26 122.1 134 54.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.9e-26 122.1 81 69.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.9e-26 122.1 123 55.3
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 6.7e-26 121.3 123 56.9
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 6.7e-26 121.3 123 56.9
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 6.7e-26 121.3 170 44.7
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 8.8e-26 120.9 162 50.0
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 8.8e-26 120.9 91 62.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.1e-25 120.6 85 64.7
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.1e-25 120.6 159 46.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.1e-25 120.6 167 44.3
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.5e-25 120.2 111 54.1
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.9e-25 119.8 160 46.9
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.5e-25 119.4 80 68.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.3e-25 119.0 100 62.0
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 4.3e-25 118.6 120 52.5
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 5.7e-25 118.2 141 47.5
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.7e-25 118.2 117 53.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.7e-25 118.2 166 47.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 5.7e-25 118.2 162 45.1
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 7.4e-25 117.9 173 43.4
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 9.7e-25 117.5 134 48.5
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.3e-24 117.1 106 53.8
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.7e-24 116.7 131 48.9
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.8e-24 115.9 119 50.4
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 4.8e-24 115.2 117 53.8
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 4.8e-24 115.2 106 52.8
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 8.2e-24 114.4 151 43.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.1e-23 114.0 159 45.3
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.1e-23 114.0 108 51.9
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.1e-23 114.0 114 50.9
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.1e-23 114.0 150 50.7
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.4e-23 113.6 159 45.9
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.4e-23 113.6 90 61.1
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-23 113.6 165 43.0
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.4e-23 113.6 116 50.0
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.8e-23 113.2 96 58.3
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.8e-23 113.2 156 50.0
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.8e-23 113.2 79 65.8
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.4e-23 112.8 165 41.8
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.4e-23 112.8 151 43.7
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.4e-23 112.8 76 72.4
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.1e-23 112.5 164 43.9
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.1e-23 112.1 160 41.9
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 4.1e-23 112.1 172 42.4
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 4.1e-23 112.1 156 39.7
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 4.1e-23 112.1 130 52.3
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 9.1e-23 110.9 160 42.5
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 9.1e-23 110.9 125 47.2
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.1e-23 110.9 125 47.2
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.2e-22 110.5 92 62.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.2e-22 110.5 168 43.5
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.5e-22 110.2 167 42.5
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.0e-22 109.8 164 41.5
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.0e-22 109.8 166 43.4
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 2.0e-22 109.8 82 62.2
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.0e-22 109.8 163 42.3
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.6e-22 109.4 153 42.5
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.6e-22 109.4 163 42.9
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.6e-22 109.4 81 64.2
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-22 109.0 125 46.4
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-22 109.0 125 46.4
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.5e-22 108.6 161 42.2
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 4.5e-22 108.6 80 60.0
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 7.7e-22 107.8 160 39.4
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.0e-21 107.5 130 48.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.3e-21 107.1 170 42.4
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.7e-21 106.7 100 57.0
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.7e-21 106.7 111 48.6
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.7e-21 106.7 158 41.1
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.7e-21 106.7 173 43.4
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 2.2e-21 106.3 110 55.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 2.2e-21 106.3 158 41.8
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.9e-21 105.9 135 45.9
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.9e-21 105.9 168 41.7
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 3.8e-21 105.5 77 63.6
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 3.8e-21 105.5 162 42.0
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 5.0e-21 105.1 162 41.4
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.5e-21 104.8 105 51.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 8.5e-21 104.4 176 43.2
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 8.5e-21 104.4 161 41.0
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.1e-20 104.0 169 43.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.1e-20 104.0 113 53.1
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.1e-20 104.0 101 47.5
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.1e-20 104.0 160 38.8
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.9e-20 103.2 114 45.6
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.5e-20 102.8 162 40.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 4.2e-20 102.1 88 52.3
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.2e-20 102.1 173 42.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.5e-20 101.7 174 40.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 5.5e-20 101.7 159 40.9
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 7.2e-20 101.3 160 44.4
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.2e-19 100.5 103 50.5
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.2e-19 100.5 124 45.2
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.2e-19 100.5 167 39.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.6e-19 100.1 116 50.9
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.6e-19 100.1 92 56.5
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.6e-19 100.1 162 42.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.1e-19 99.8 140 42.9
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 2.7e-19 99.4 127 48.8
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 3.6e-19 99.0 175 41.1
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.6e-19 99.0 140 42.1
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.7e-19 98.6 81 54.3
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.4e-18 97.1 140 42.9
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.8e-18 96.7 122 45.9
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 6.7e-18 94.7 79 55.7
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.0e-17 93.2 94 54.3
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.6e-17 92.8 177 42.4
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 9.7e-17 90.9 72 58.3
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.2e-16 87.8 81 49.4
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 8.2e-16 87.8 78 52.6
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.8e-15 86.7 141 44.7
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.8e-15 86.7 81 48.1
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.1e-15 85.9 115 40.0
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 4.1e-15 85.5 80 47.5
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.9e-15 84.7 120 40.0
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 6.9e-15 84.7 74 55.4
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 6.9e-15 84.7 74 55.4
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.5e-14 83.6 101 47.5
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 2.6e-14 82.8 83 49.4
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 5.0e-13 78.6 126 40.5
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.2e-12 75.9 125 38.4
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.0e-10 70.9 81 45.7
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 3.0e-10 69.3 150 34.0
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.8e-10 67.8 80 45.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.8e-10 67.8 80 45.0
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.6e-06 57.0 128 32.0
C07p44110 Brassica napus HOM05D031907 ORTHO05D039125 3.5e-06 55.8 41 58.5


User provided reference genes

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