Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 2.1e-142 509.2 290 100.0
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 2.8e-99 365.9 299 69.2
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 3.0e-77 292.7 295 60.0
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 1.1e-74 284.3 297 59.3
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.4e-69 267.3 217 68.2
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 1.1e-66 257.7 294 54.1
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 3.1e-66 256.1 294 53.7
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 9.1e-66 254.6 298 53.7
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 7.7e-65 251.5 299 55.9
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 7.7e-65 251.5 300 54.3
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 2.2e-64 250.0 298 55.7
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 4.2e-63 245.7 300 54.3
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 4.2e-63 245.7 299 54.2
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 5.5e-63 245.4 297 54.2
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 2.1e-62 243.4 303 54.1
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 2.8e-62 243.0 297 53.5
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 2.8e-62 243.0 301 55.1
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.8e-61 240.4 300 54.7
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 6.8e-61 238.4 293 54.3
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 8.8e-61 238.0 300 54.3
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 1.5e-60 237.3 301 53.5
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 2.0e-60 236.9 305 53.1
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 4.9e-59 232.3 306 49.3
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 1.8e-58 230.3 300 53.7
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 2.4e-58 229.9 302 53.3
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 3.1e-58 229.6 166 72.9
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 4.1e-58 229.2 294 52.7
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 5.4e-58 228.8 308 51.0
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 5.4e-58 228.8 318 51.9
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 7.0e-58 228.4 299 51.8
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 1.2e-57 227.6 300 50.3
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.6e-57 227.3 293 52.9
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 5.9e-57 225.3 307 51.8
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 1.3e-56 224.2 307 51.5
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 2.9e-56 223.0 290 54.1
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 8.6e-56 221.5 302 51.3
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 1.0e-53 214.5 296 53.0
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.0e-53 214.5 307 49.8
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.8e-53 213.8 310 48.4
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 1.8e-53 213.8 293 51.2
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.8e-53 213.8 300 48.3
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 3.0e-53 213.0 305 50.5
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 4.0e-53 212.6 292 50.7
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 6.8e-53 211.8 304 49.0
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 1.5e-52 210.7 295 48.1
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 4.4e-52 209.1 302 50.7
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 5.7e-52 208.8 302 47.4
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.7e-51 207.2 304 50.7
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 6.4e-51 205.3 299 49.5
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 6.4e-51 205.3 299 48.8
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 1.1e-50 204.5 293 49.8
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.4e-50 204.1 294 48.6
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 1.8e-50 203.8 299 48.8
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.2e-50 203.0 296 49.3
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 3.2e-50 203.0 284 47.9
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 4.1e-50 202.6 299 48.5
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 7.0e-50 201.8 296 49.0
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 7.0e-50 201.8 302 47.4
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 4.6e-49 199.1 296 49.0
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 5.9e-49 198.7 301 47.8
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 7.8e-49 198.4 286 58.0
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 1.0e-48 198.0 289 48.8
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.3e-48 197.6 296 48.6
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 1.9e-47 193.7 296 47.0
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 3.3e-47 193.0 291 48.1
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 4.3e-47 192.6 268 50.4
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 9.5e-47 191.4 297 49.8
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 5.2e-45 185.7 298 46.6
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 6.8e-45 185.3 205 61.0
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 6.8e-45 185.3 300 48.0
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 2.6e-44 183.3 268 48.9
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 7.5e-44 181.8 299 46.2
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 9.8e-44 181.4 292 44.2
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.3e-43 181.0 300 48.0
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.7e-43 180.6 296 47.0
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 2.2e-43 180.3 303 48.5
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 2.2e-43 180.3 306 48.0
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 3.7e-43 179.5 298 46.0
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 4.9e-43 179.1 304 55.6
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 4.9e-43 179.1 298 46.0
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 1.4e-42 177.6 302 46.7
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 2.4e-42 176.8 298 45.6
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 2.4e-42 176.8 165 64.2
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 4.1e-42 176.0 285 47.4
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 5.4e-42 175.6 290 45.9
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 1.6e-41 174.1 273 54.2
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.7e-41 173.3 296 45.6
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 1.0e-40 171.4 276 56.2
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.7e-40 170.6 296 44.3
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 2.3e-40 170.2 298 45.0
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 5.6e-39 165.6 326 41.7
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 7.3e-39 165.2 293 46.1
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 2.8e-38 163.3 251 50.6
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 6.2e-38 162.2 300 43.3
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 8.3e-35 151.8 282 45.4
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 8.3e-35 151.8 301 40.5
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 8.3e-35 151.8 267 45.3
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 7.1e-34 148.7 226 49.1
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 7.1e-34 148.7 177 57.6
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 1.2e-33 147.9 290 40.3
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 5.6e-31 139.0 259 44.4
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 1.2e-28 131.3 269 41.3
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 1.2e-25 121.3 176 50.0
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 1.7e-24 117.5 345 33.6
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.9e-23 114.0 263 42.6
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 3.3e-23 113.2 98 63.3
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 5.6e-23 112.5 241 46.9
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 2.6e-20 103.6 184 41.8
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 1.7e-19 100.9 183 41.0
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 9.3e-18 95.1 251 35.5
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 1.3e-16 91.3 75 65.3
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 2.3e-16 90.5 86 61.6
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 2.3e-16 90.5 104 64.4
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 1.1e-13 81.6 66 63.6
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 4.0e-13 79.7 66 60.6
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 4.0e-13 79.7 66 60.6
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 2.0e-12 77.4 72 52.8
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 2.6e-12 77.0 62 62.9
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 1.7e-11 74.3 43 76.7
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 3.8e-11 73.2 41 80.5
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 3.8e-11 73.2 63 63.5
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 1.4e-10 71.2 41 78.0
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 1.9e-10 70.9 42 76.2
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 1.9e-10 70.9 42 76.2
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 7.1e-10 68.9 39 79.5
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 1.2e-09 68.2 158 38.0
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 3.5e-09 66.6 37 81.1
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 4.6e-09 66.2 76 53.9


User provided reference genes

Program Settings