Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g093050 Amaranthus hybridus HOM05D003556 ORTHO05D003404 2.0e-49 198.7 99 100.0
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.4e-29 132.9 94 63.8
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 5.2e-29 131.0 94 61.7
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 1.2e-28 129.8 94 62.8
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 9.2e-18 93.6 90 45.6
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.3e-11 73.2 87 43.7
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 6.4e-11 70.9 94 36.2
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 6.4e-11 70.9 95 42.1
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 8.3e-11 70.5 94 37.2
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.4e-10 69.7 92 40.2
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.9e-10 69.3 94 40.4
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.9e-10 69.3 94 40.4
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.9e-10 69.3 86 39.5
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.4e-10 68.9 94 40.4
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 3.2e-10 68.6 94 35.1
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.2e-10 68.6 90 40.0
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 5.4e-10 67.8 94 40.4
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.2e-09 66.6 92 40.2
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 1.6e-09 66.2 96 39.6
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 1.6e-09 66.2 90 40.0
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 2.1e-09 65.9 94 39.4
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.7e-09 65.5 90 37.8
EL10Ac7g18175 Beta vulgaris HOM05D003556 ORTHO05D003404 4.6e-09 64.7 46 60.9
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 4.6e-09 64.7 89 43.8
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.0e-08 63.5 94 36.2
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 1.3e-08 63.2 82 40.2
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 3.9e-08 61.6 86 34.9
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 5.1e-08 61.2 96 34.4
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 5.1e-08 61.2 95 35.8
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 5.1e-08 61.2 97 33.0
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 6.6e-08 60.8 97 36.1
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 8.6e-08 60.5 83 39.8
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 8.6e-08 60.5 91 36.3
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 1.1e-07 60.1 77 39.0
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 1.5e-07 59.7 85 36.5
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 3.3e-07 58.5 95 30.5
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 4.3e-07 58.2 88 31.8
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.3e-07 58.2 96 35.4
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 4.3e-07 58.2 94 34.0
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 4.3e-07 58.2 83 38.6
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 4.3e-07 58.2 89 32.6
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 7.3e-07 57.4 89 36.0
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 7.3e-07 57.4 89 36.0
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 7.3e-07 57.4 89 36.0
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 7.3e-07 57.4 89 36.0
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 7.3e-07 57.4 89 36.0
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 7.3e-07 57.4 96 34.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 7.3e-07 57.4 86 32.6
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 7.3e-07 57.4 90 35.6
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 7.3e-07 57.4 97 30.9
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 7.3e-07 57.4 87 35.6
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 9.5e-07 57.0 86 33.7
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 9.5e-07 57.0 89 32.6
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 9.5e-07 57.0 89 31.5
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 1.6e-06 56.2 89 34.8
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 1.6e-06 56.2 83 37.3
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 2.1e-06 55.8 89 34.8
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 2.1e-06 55.8 89 34.8
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 2.1e-06 55.8 89 34.8
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.1e-06 55.8 83 32.5
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 2.8e-06 55.5 89 32.6
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 2.8e-06 55.5 93 30.1
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 3.6e-06 55.1 91 31.9
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 3.6e-06 55.1 89 34.8
QL03p019667 Quercus lobata HOM05D003556 ORTHO05D003404 3.6e-06 55.1 83 31.3
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 3.6e-06 55.1 88 31.8
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 4.7e-06 54.7 89 33.7
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 4.7e-06 54.7 91 31.9
QL03p019019 Quercus lobata HOM05D003556 ORTHO05D003404 6.2e-06 54.3 83 31.3
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 8.1e-06 53.9 89 33.7
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 8.1e-06 53.9 79 30.4
QL03p019662 Quercus lobata HOM05D003556 ORTHO05D003404 8.1e-06 53.9 83 31.3
QL08p042930 Quercus lobata HOM05D003556 ORTHO05D003404 8.1e-06 53.9 83 31.3
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 8.1e-06 53.9 90 32.2


User provided reference genes

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