Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.7e-159 566.2 351 100.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.4e-89 333.2 360 61.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 9.3e-73 278.1 354 62.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.0e-35 154.1 184 62.5
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 1.0e-34 151.8 281 39.1
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.9e-34 150.2 372 42.5
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 9.4e-33 145.2 277 39.7
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 2.7e-32 143.7 277 41.5
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.0e-31 141.7 268 42.2
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 2.3e-31 140.6 306 38.2
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 3.0e-31 140.2 278 41.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 8.8e-31 138.7 286 40.6
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 2.0e-30 137.5 274 40.1
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 4.4e-30 136.3 279 39.8
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 7.5e-30 135.6 286 40.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 6.3e-29 132.5 292 37.3
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 8.3e-29 132.1 296 37.8
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 7.0e-28 129.0 289 36.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 9.1e-28 128.6 283 38.9
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 1.2e-27 128.3 284 37.0
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 3.5e-27 126.7 290 40.0
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 5.9e-27 125.9 284 36.3
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 1.0e-26 125.2 280 40.4
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.3e-26 124.8 301 39.5
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 1.7e-26 124.4 285 36.5
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.9e-26 123.6 300 40.0
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 2.9e-26 123.6 267 37.5
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 2.9e-26 123.6 305 38.0
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 6.6e-26 122.5 276 36.2
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.5e-25 121.3 276 39.9
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 2.5e-25 120.6 284 38.4
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 3.3e-25 120.2 279 40.1
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 7.2e-25 119.0 296 37.8
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 9.5e-25 118.6 299 36.1
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.6e-24 117.9 272 43.8
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 6.1e-24 115.9 278 40.6
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 8.0e-24 115.5 253 36.0
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 1.4e-23 114.8 304 36.8
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 1.4e-23 114.8 298 34.2
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.8e-23 114.4 283 38.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.8e-23 114.4 302 37.1
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.8e-23 114.4 274 35.8
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.3e-23 114.0 293 37.9
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.0e-23 113.6 242 38.4
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 5.2e-23 112.8 290 36.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 5.2e-23 112.8 295 37.6
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 8.9e-23 112.1 278 36.0
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.0e-22 110.9 291 33.7
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.6e-22 110.5 289 39.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.7e-22 109.4 277 39.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 7.5e-22 109.0 298 32.6
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 7.5e-22 109.0 299 34.1
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.3e-21 108.2 318 39.6
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.7e-21 107.8 282 34.0
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 4.9e-21 106.3 279 37.6
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.4e-21 105.9 300 33.0
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 6.4e-21 105.9 304 39.1
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 8.3e-21 105.5 290 34.1
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.1e-20 105.1 284 35.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.4e-20 104.8 318 31.8
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 1.4e-20 104.8 280 37.1
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 3.2e-20 103.6 304 34.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 5.4e-20 102.8 317 32.5
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 7.0e-20 102.4 283 36.0
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.2e-20 102.1 308 36.7
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.2e-19 101.7 277 37.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.6e-19 101.3 315 30.5
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.0e-19 100.9 283 37.5
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 2.7e-19 100.5 292 35.6
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 3.5e-19 100.1 281 40.2
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.5e-19 100.1 281 40.2
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.9e-19 99.4 280 35.7
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 5.9e-19 99.4 306 37.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.3e-18 98.2 291 36.1
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.3e-18 98.2 323 32.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.3e-18 97.4 330 30.9
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 2.9e-18 97.1 303 37.0
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 2.9e-18 97.1 280 32.9
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 2.9e-18 97.1 284 37.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.3e-17 93.6 272 34.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-16 91.7 318 29.6
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.6e-16 91.3 284 40.1
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 2.8e-16 90.5 277 34.3
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 3.6e-16 90.1 175 37.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.8e-15 85.9 322 27.3
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.2e-14 85.1 357 30.3
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 5.8e-14 82.8 269 34.2
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 5.8e-14 82.8 294 31.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.3e-13 81.6 223 34.5
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 2.2e-13 80.9 150 43.3
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.7e-13 80.1 282 31.9
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.9e-13 79.7 272 30.9
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-12 78.6 310 31.3
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.4e-12 78.2 342 29.8
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.4e-12 77.4 282 33.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.1e-12 76.6 290 30.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 7.0e-12 75.9 286 30.1
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.5e-11 73.6 126 37.3
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 7.8e-11 72.4 312 28.8
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 5.0e-10 69.7 336 28.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 8.6e-10 68.9 321 28.3
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 1.1e-09 68.6 309 30.1
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.9e-09 67.8 200 27.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.3e-09 67.0 204 33.3
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.3e-09 67.0 200 27.5
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 4.3e-09 66.6 202 28.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.6e-09 66.2 302 29.1
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 5.6e-09 66.2 317 28.1
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 9.5e-09 65.5 334 33.8
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.6e-08 64.7 270 30.4
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.6e-08 64.7 206 25.7
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.1e-08 64.3 124 33.1
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.8e-08 63.9 85 45.9
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 3.6e-08 63.5 271 28.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 4.7e-08 63.2 294 33.0
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 6.2e-08 62.8 188 28.7
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 8.1e-08 62.4 199 26.6
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.1e-07 62.0 188 28.2
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.3e-07 60.8 84 41.7
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 3.1e-07 60.5 84 39.3
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 4.0e-07 60.1 81 42.0
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 4.0e-07 60.1 92 34.8
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 5.2e-07 59.7 96 33.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 8.9e-07 58.9 109 35.8
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 8.9e-07 58.9 113 39.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 8.9e-07 58.9 191 38.2
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.5e-06 58.2 151 28.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.5e-06 58.2 193 27.5
Actinidia30125 Actinidia chinensis HOM05D007706 ORTHO05D009593 2.0e-06 57.8 53 56.6
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 2.0e-06 57.8 120 32.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.0e-06 57.8 146 29.5
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 2.6e-06 57.4 96 35.4
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 2.6e-06 57.4 267 26.2
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 2.6e-06 57.4 191 27.7
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 3.4e-06 57.0 87 39.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.4e-06 56.6 74 43.2
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 4.4e-06 56.6 96 32.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 5.8e-06 56.2 186 27.4
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 5.8e-06 56.2 204 24.5
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 5.8e-06 56.2 88 31.8
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 5.8e-06 56.2 194 28.4
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 9.8e-06 55.5 125 27.2
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 9.8e-06 55.5 74 36.5


User provided reference genes

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