Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 0.0e+00 1728.0 923 100.0
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 3.3e-218 762.7 993 53.2
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.4e-165 587.8 611 62.5
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 5.5e-141 506.1 603 57.2
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 6.8e-107 392.9 657 45.1
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 3.7e-68 264.2 730 37.0
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 6.7e-62 243.4 717 34.4
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 4.8e-60 237.3 703 34.0
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 1.8e-59 235.3 448 43.3
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 6.5e-57 226.9 555 37.7
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 7.2e-56 223.4 638 36.2
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 1.6e-55 222.2 634 35.2
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.6e-53 214.9 786 32.6
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.7e-52 212.2 782 33.5
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 6.3e-52 210.3 768 33.2
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 5.9e-50 203.8 624 34.8
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.0e-49 203.0 767 30.9
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.7e-49 202.2 846 30.9
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 2.9e-49 201.4 592 35.1
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.0e-49 200.7 662 33.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 6.5e-49 200.3 624 35.3
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 1.9e-48 198.7 616 35.2
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.2e-47 196.1 626 33.2
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 8.0e-47 193.4 665 34.4
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 1.0e-46 193.0 570 35.6
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 1.8e-46 192.2 631 33.8
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 2.6e-45 188.3 756 33.3
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 9.7e-45 186.4 762 30.3
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 9.7e-45 186.4 476 38.4
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.7e-44 184.5 768 30.5
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 6.3e-44 183.7 476 38.2
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 2.4e-43 181.8 678 32.9
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.1e-43 181.4 635 33.7
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 9.1e-43 179.9 599 33.9
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.3e-41 176.0 581 34.8
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 1.9e-40 172.2 578 33.2
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.9e-40 172.2 662 33.1
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 4.2e-40 171.0 547 34.4
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 7.2e-40 170.2 540 34.8
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 7.2e-40 170.2 534 34.6
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 9.4e-40 169.9 566 36.4
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.0e-38 166.4 458 36.7
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.8e-38 165.6 516 35.1
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.5e-37 162.5 770 29.0
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.5e-37 162.5 557 33.8
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 2.0e-37 162.2 934 30.1
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 2.6e-37 161.8 552 35.7
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 3.3e-37 161.4 547 34.6
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 4.4e-37 161.0 646 33.4
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.3e-36 159.5 517 35.0
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 4.8e-36 157.5 616 33.1
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 8.2e-36 156.8 624 32.4
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.4e-35 156.0 574 33.1
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 3.1e-35 154.8 490 35.9
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.0e-33 149.8 635 31.3
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 1.5e-32 146.0 661 31.3
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 1.5e-32 146.0 634 30.4
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 1.5e-32 146.0 458 35.4
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.5e-32 146.0 557 33.8
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.5e-32 146.0 788 29.6
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.5e-32 145.2 537 32.6
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 4.2e-32 144.4 644 31.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 5.5e-32 144.1 299 39.8
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 7.2e-32 143.7 548 34.1
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 1.2e-31 142.9 458 35.2
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 6.1e-31 140.6 549 32.1
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.0e-30 139.8 794 29.5
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 1.8e-30 139.0 724 29.1
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 4.0e-30 137.9 602 32.7
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.2e-30 137.5 648 30.4
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 8.8e-30 136.7 528 31.8
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 1.5e-29 136.0 593 30.4
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.0e-29 135.6 672 31.8
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 2.0e-29 135.6 608 30.9
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 2.6e-29 135.2 602 30.6
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.6e-29 135.2 540 33.0
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 2.6e-29 135.2 790 29.4
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.2e-28 132.1 509 30.6
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 2.8e-28 131.7 829 28.1
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 8.3e-28 130.2 542 32.7
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.8e-27 129.0 509 30.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 4.1e-27 127.9 601 29.0
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 4.1e-27 127.9 593 31.9
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.2e-26 126.3 565 30.1
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 1.2e-26 126.3 229 43.2
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.6e-26 125.9 534 33.9
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 5.9e-26 124.0 554 29.8
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 7.7e-26 123.6 596 31.0
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.0e-25 123.2 565 28.5
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 3.8e-25 121.3 540 30.2
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 5.0e-25 120.9 482 32.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 6.6e-25 120.6 288 37.2
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 8.6e-25 120.2 535 30.7
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 1.9e-24 119.0 563 31.4
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 3.3e-24 118.2 563 31.4
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 4.2e-24 117.9 160 48.1
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 5.5e-24 117.5 471 31.4
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 7.2e-24 117.1 523 31.0
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.6e-23 115.9 559 30.6
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 2.8e-23 115.2 665 28.4
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 1.0e-22 113.2 553 31.6
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 1.4e-22 112.8 508 30.5
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 4.0e-22 111.3 554 30.1
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 8.9e-22 110.2 607 29.0
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 8.9e-22 110.2 148 49.3
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 2.6e-21 108.6 503 30.2
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.4e-21 108.2 532 28.8
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 3.4e-21 108.2 615 29.1
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 4.4e-21 107.8 545 29.0
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 5.7e-21 107.5 560 30.5
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 7.5e-21 107.1 604 29.1
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.7e-20 105.9 552 28.8
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.8e-20 105.1 550 28.5
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 6.3e-20 104.0 624 27.4
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 1.1e-19 103.2 654 27.4
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 1.8e-19 102.4 544 28.7
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 3.1e-19 101.7 467 31.0
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.1e-19 101.3 549 28.1
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 5.4e-19 100.9 597 29.3
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 9.2e-19 100.1 275 34.2
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.2e-18 99.8 536 27.4
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.2e-18 99.8 536 27.4
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 2.7e-18 98.6 647 27.4
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 2.7e-18 98.6 503 30.0
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.3e-17 96.3 380 28.4
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.7e-17 95.9 543 28.9
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.9e-17 95.1 536 26.9
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 6.6e-17 94.0 118 53.4
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 6.6e-17 94.0 118 53.4
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 8.6e-17 93.6 599 27.2
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.5e-16 92.0 553 27.8
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 7.3e-16 90.5 508 28.0
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.6e-15 89.4 589 27.3
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 4.7e-15 87.8 567 26.3
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 4.7e-15 87.8 380 32.4
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 6.1e-15 87.4 518 27.2
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 6.1e-15 87.4 518 27.2
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 6.1e-15 87.4 570 28.4
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 6.1e-15 87.4 557 29.4
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 1.0e-14 86.7 572 28.3
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.4e-14 86.3 413 29.3
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 8.9e-14 83.6 521 26.1
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 8.9e-14 83.6 560 26.6
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 3.4e-13 81.6 531 26.6
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.5e-13 80.5 614 27.0
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.3e-12 79.7 71 54.9
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.9e-12 78.6 491 29.7
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 8.3e-12 77.0 625 26.7
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 8.3e-12 77.0 514 27.0
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.1e-11 76.6 496 30.8
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.4e-11 76.3 441 29.0
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.9e-11 75.9 460 27.2
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 4.1e-11 74.7 584 28.3
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.1e-11 74.7 584 28.3
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 4.1e-11 74.7 98 46.9
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 1.6e-10 72.8 439 29.8
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 2.7e-10 72.0 453 27.8
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.5e-10 71.6 552 26.1
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.0e-10 70.9 115 45.2
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.8e-10 70.5 468 28.0
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 1.3e-09 69.7 159 38.4
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.7e-09 69.3 503 26.8
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 3.9e-09 68.2 529 28.5
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 3.9e-09 68.2 339 29.5
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 5.0e-09 67.8 422 28.9
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.6e-09 67.4 100 49.0
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 6.6e-09 67.4 459 27.0
Ca_11451_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 6.6e-09 67.4 524 28.1
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.6e-09 67.0 499 28.7
Sabra05G0023700 Salix brachista HOM05D003265 ORTHO05D003819 1.5e-08 66.2 71 57.7
Lalb_Chr06g0171401 Lupinus albus HOM05D003265 ORTHO05D003819 2.5e-08 65.5 77 54.5
CDE09G0374 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 3.3e-08 65.1 225 31.6
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 3.3e-08 65.1 474 27.2
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 9.5e-08 63.5 383 28.7
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 9.5e-08 63.5 559 27.2
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 9.5e-08 63.5 535 28.4
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 1.6e-07 62.8 525 26.7
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.6e-07 62.8 628 26.3
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.8e-07 62.0 425 28.5
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 4.7e-07 61.2 520 27.7
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 2.3e-06 58.9 98 39.8
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 3.1e-06 58.5 589 26.1
Sabra19G0043200 Salix brachista HOM05D009213 ORTHO05D010313 5.2e-06 57.8 66 62.1
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 6.8e-06 57.4 188 31.9
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 6.8e-06 57.4 188 31.9
AT2G38890 Arabidopsis thaliana HOM05D013918 ORTHO05D013953 8.9e-06 57.0 201 30.3
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 8.9e-06 57.0 83 47.0


User provided reference genes

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