Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 7.8e-305 1049.7 535 100.0
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 2.8e-145 519.6 715 46.4
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.4e-120 436.8 724 39.9
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 8.9e-99 365.2 749 35.4
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 2.6e-98 363.6 705 37.3
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 3.4e-98 363.2 730 36.6
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 2.4e-96 357.1 743 35.3
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 1.7e-94 350.9 748 34.5
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.3e-94 350.5 701 35.7
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.1e-93 348.2 701 35.5
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.9e-93 347.4 710 35.4
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 5.6e-93 345.9 727 34.5
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 7.3e-93 345.5 735 35.0
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 1.6e-92 344.4 717 35.6
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.0e-92 342.0 749 34.0
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.8e-91 340.9 724 35.5
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 6.8e-91 339.0 722 35.2
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 8.9e-91 338.6 517 42.7
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 1.5e-90 337.8 717 34.9
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.5e-90 337.8 729 36.2
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 2.0e-90 337.4 725 33.9
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 2.0e-90 337.4 726 35.0
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.3e-89 334.7 710 34.8
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 1.7e-89 334.3 702 35.2
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 2.2e-89 334.0 756 34.8
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.2e-89 334.0 770 33.5
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 2.9e-89 333.6 739 34.4
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 2.9e-89 333.6 727 35.1
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 8.3e-89 332.0 733 34.5
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 2.4e-88 330.5 760 34.5
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 4.1e-88 329.7 737 33.6
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 4.1e-88 329.7 703 34.3
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 7.0e-88 328.9 692 35.3
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 9.2e-88 328.6 728 34.3
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.6e-87 327.8 754 34.0
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 2.0e-87 327.4 733 33.2
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 3.5e-87 326.6 718 34.7
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 3.5e-87 326.6 714 34.7
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 6.0e-87 325.9 741 34.1
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 1.0e-86 325.1 731 33.9
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 1.3e-86 324.7 307 57.3
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.7e-86 324.3 715 35.0
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 8.6e-86 322.0 722 34.5
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 8.6e-86 322.0 717 34.3
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 8.6e-86 322.0 747 33.1
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.9e-85 320.9 730 33.4
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 2.5e-85 320.5 707 34.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 3.3e-85 320.1 717 33.2
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 4.3e-85 319.7 695 34.7
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 1.8e-83 314.3 728 35.0
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 3.1e-83 313.5 720 34.0
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.1e-83 313.5 792 31.7
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.0e-83 313.2 712 34.6
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 6.8e-83 312.4 708 33.8
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 2.0e-82 310.8 741 32.4
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 2.6e-82 310.5 702 35.0
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 3.4e-82 310.1 699 34.0
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.9e-81 307.0 698 33.0
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 8.3e-81 305.4 717 31.7
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 8.3e-81 305.4 710 32.7
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 8.3e-81 305.4 704 33.5
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 8.3e-81 305.4 701 34.7
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 1.4e-80 304.7 708 33.6
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.4e-80 303.9 414 43.7
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 2.1e-79 300.8 700 34.1
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 2.7e-79 300.4 421 43.7
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.5e-79 300.1 737 31.9
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 4.6e-79 299.7 421 43.0
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 1.3e-78 298.1 711 32.9
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.3e-78 298.1 714 33.2
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.5e-77 294.7 720 32.4
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.9e-77 294.3 421 42.8
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 4.3e-77 293.1 700 33.3
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 5.6e-77 292.7 711 32.2
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 1.6e-76 291.2 711 32.1
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.6e-76 291.2 406 43.3
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 2.8e-76 290.4 414 43.0
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 4.7e-76 289.7 469 39.4
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 4.7e-76 289.7 695 32.2
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 2.3e-75 287.3 735 31.4
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 4.0e-75 286.6 690 32.8
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.6e-74 283.9 484 39.0
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 6.4e-73 279.3 743 30.7
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 8.3e-73 278.9 429 40.6
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 4.6e-71 273.1 710 31.8
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 1.0e-70 271.9 421 39.4
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.3e-69 266.5 683 31.6
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 1.8e-67 261.2 540 36.5
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.6e-66 257.3 793 29.4
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 4.4e-66 256.5 705 30.2
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 7.6e-66 255.8 675 31.6
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 6.0e-63 246.1 699 30.2
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 3.9e-62 243.4 708 30.1
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.7e-57 228.0 161 73.9
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 3.8e-57 226.9 150 77.3
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 6.0e-55 219.5 161 68.9
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.9e-54 216.9 154 72.7
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.9e-53 214.5 435 34.9
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.3e-53 212.6 158 69.0
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-52 211.8 134 80.6
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 1.3e-52 211.8 135 79.3
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 8.1e-52 209.1 152 70.4
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 3.1e-51 207.2 132 78.8
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 6.9e-51 206.1 136 77.2
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 5.8e-50 203.0 139 75.5
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.2e-49 201.1 120 83.3
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 2.4e-48 197.6 420 33.6
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 2.3e-46 191.0 421 34.4
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.1e-45 188.7 739 27.3
AUR62040333 Chenopodium quinoa HOM05D003515 ORTHO05D004347 9.6e-45 185.7 159 59.1
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 3.7e-44 183.7 415 33.3
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.8e-43 181.4 406 34.7
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 5.8e-42 176.4 158 57.0
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 3.8e-41 173.7 417 30.7
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 2.1e-39 167.9 158 57.0
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.5e-39 167.2 173 57.8
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 3.0e-38 164.1 409 32.5
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.0e-35 152.5 115 71.3
CSS0035626 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.7e-33 148.3 115 59.1
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 6.5e-33 146.4 135 54.8
CSS0002615 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.4e-32 145.2 137 54.0
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 3.0e-30 137.5 112 56.2
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 9.0e-27 125.9 90 71.1
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 1.2e-26 125.6 118 57.6
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 1.2e-26 125.6 118 57.6
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 1.2e-26 125.6 118 58.5
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 2.0e-26 124.8 91 70.3
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 2.0e-26 124.8 91 70.3
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 2.0e-26 124.8 91 70.3
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 2.0e-26 124.8 91 70.3
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.0e-25 122.5 135 52.6
Phvul.007G100966 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.0e-25 122.5 84 66.7
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 1.3e-25 122.1 118 55.9
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.7e-25 121.7 85 75.3
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 2.9e-25 120.9 119 57.1
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 1.1e-24 119.0 88 69.3
CSS0041486 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.5e-24 117.9 109 52.3
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 3.2e-24 117.5 150 48.7
CSS0025043 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.2e-24 117.1 115 49.6
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 1.6e-23 115.2 106 51.9
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 2.7e-23 114.4 154 46.1
Sopen01g017590 Solanum pennellii HOM05D003515 ORTHO05D004347 3.6e-23 114.0 97 60.8
CSS0030035 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.6e-23 113.6 109 50.5
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 1.0e-22 112.5 74 75.7
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 3.7e-20 104.0 159 39.6
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 1.4e-19 102.1 245 33.5
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 9.1e-19 99.4 82 56.1
RcHm_v2.0_Chr5g0021121 Rosa chinensis HOM05D003515 ORTHO05D004347 3.4e-18 97.4 384 28.4
arahy.Tifrunner.gnm1.ann1.E07S37 Arachis hypogaea HOM05D003509 ORTHO05D001340 3.9e-14 84.0 92 48.9
MD10G1227100 Malus domestica HOM05D003515 ORTHO05D004347 1.8e-11 75.1 179 32.4
MSTRG.2875 Avicennia marina HOM05D003515 ORTHO05D004347 1.3e-09 68.9 135 37.8
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 1.3e-09 68.9 116 35.3
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 3.8e-09 67.4 113 40.7
TPR.G28148 Trifolium pratense HOM05D003515 ORTHO05D004347 3.8e-09 67.4 118 40.7
Hma1.2p1_0088F.1_g045250 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 5.0e-09 67.0 138 37.0
CBR_g20120 Chara braunii HOM05D003515 ORTHO05D004347 6.5e-09 66.6 137 32.1
SMO222G0016 Selaginella moellendorffii HOM05D010282 ORTHO05D004347 5.5e-08 63.5 111 38.7
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 9.4e-08 62.8 116 37.1
PRCOL_00005783 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 1.2e-07 62.4 123 38.2
CSS0004888 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.7e-07 61.2 115 32.2
CSS0041884 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.1e-07 60.1 115 32.2
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 1.0e-06 59.3 109 39.4
Cre03.g148050 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.8e-06 58.5 102 36.3
Cpa.g.sc30.106 Carica papaya HOM05D003515 ORTHO05D004347 2.3e-06 58.2 127 31.5


User provided reference genes

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