Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 0.0e+00 1289.2 669 100.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.4e-197 693.7 498 75.7
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.5e-191 673.7 655 57.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 8.3e-187 657.9 657 58.0
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.3e-171 607.4 670 53.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.2e-170 601.3 654 55.4
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.3e-143 512.7 678 46.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 5.1e-136 489.2 673 45.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.6e-134 484.2 676 43.9
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 3.6e-134 483.0 701 43.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.3e-133 479.2 677 44.2
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.6e-132 476.9 689 44.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 6.4e-131 472.2 672 43.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.9e-130 470.7 680 42.5
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 6.7e-128 462.2 677 42.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.3e-127 459.5 694 42.8
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 7.4e-127 458.8 676 43.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.1e-125 454.9 699 42.8
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.6e-124 450.3 686 41.8
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.7e-123 447.6 663 42.8
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.1e-122 444.9 677 41.9
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.1e-122 444.9 680 42.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-122 444.5 683 42.3
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 9.3e-122 441.8 682 41.2
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.1e-121 440.7 703 41.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.1e-121 440.7 697 41.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 3.5e-121 439.9 697 41.3
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.9e-121 438.7 674 42.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.3e-120 438.0 665 40.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.3e-120 437.2 661 40.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.7e-120 435.6 695 40.1
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.3e-119 433.3 696 41.2
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 5.3e-117 426.0 710 41.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.2e-116 424.9 697 40.7
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 5.8e-116 422.5 671 39.3
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.3e-115 421.4 673 40.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.5e-114 416.0 697 40.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 7.1e-114 415.6 585 42.2
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.1e-113 414.1 653 40.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-112 411.8 682 41.9
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 3.9e-112 409.8 657 41.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.1e-112 409.5 684 38.7
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.5e-111 407.9 563 43.9
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.9e-111 407.5 657 41.4
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 4.3e-111 406.4 620 39.7
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.3e-111 406.4 656 38.4
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 9.7e-111 405.2 682 39.1
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.8e-110 402.9 675 39.6
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.8e-109 401.0 655 40.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 5.3e-109 399.4 696 38.4
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 6.9e-109 399.1 567 42.9
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 9.0e-109 398.7 664 41.0
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-108 398.3 680 38.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.5e-108 396.4 630 40.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.2e-107 394.0 695 38.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.8e-107 393.3 656 39.6
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 8.5e-107 392.1 688 40.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-106 391.3 678 39.1
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.2e-106 389.0 667 37.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 7.2e-106 389.0 669 38.0
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.2e-105 388.3 674 38.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.6e-105 387.9 747 37.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.6e-105 386.3 663 40.7
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.6e-105 386.3 687 38.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.8e-104 384.4 607 41.2
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.8e-104 384.4 688 37.8
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.5e-103 381.3 695 38.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 3.3e-103 380.2 691 38.4
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 5.7e-103 379.4 665 39.4
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 9.7e-103 378.6 697 37.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 9.7e-103 378.6 696 37.9
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.7e-103 378.6 695 37.1
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.7e-102 376.7 695 37.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.5e-100 371.3 652 38.7
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.0e-100 370.9 687 38.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.0e-100 370.9 572 42.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.6e-100 370.5 687 38.6
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.4e-100 370.2 652 38.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 5.9e-100 369.4 674 37.1
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.0e-99 368.6 693 38.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.9e-99 367.1 674 36.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 5.5e-98 362.8 637 37.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.2e-97 361.7 575 39.8
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 6.1e-97 359.4 686 37.9
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-95 355.1 675 39.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.6e-95 354.0 696 38.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 5.7e-95 352.8 689 37.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.7e-94 351.3 650 38.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.9e-92 342.8 556 38.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.3e-91 341.7 631 35.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.7e-91 341.3 537 39.3
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 5.0e-91 339.7 687 35.4
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.9e-90 337.8 683 35.1
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.7e-89 333.2 348 54.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.0e-87 327.8 674 35.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.5e-84 317.0 490 39.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.1e-81 307.8 490 41.6
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.1e-81 307.8 633 36.5
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.5e-79 301.6 464 41.4
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.4e-79 300.1 496 38.5
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.8e-75 287.0 575 36.7
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.1e-73 281.2 479 37.8
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-72 278.9 721 33.6
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 6.3e-70 269.6 604 34.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.4e-69 266.5 647 32.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.0e-68 264.6 470 36.0
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-66 258.8 540 35.6
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.5e-66 257.7 478 37.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.2e-65 255.4 719 32.3
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 5.7e-63 246.5 745 31.0
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.8e-63 245.7 383 41.0
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.3e-62 243.0 476 35.9
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 8.3e-62 242.7 336 43.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.1e-61 240.7 838 29.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 5.4e-61 240.0 645 32.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-60 238.0 649 32.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 5.9e-60 236.5 647 31.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-59 235.0 535 32.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.8e-59 233.8 686 31.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.8e-59 233.8 342 41.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 8.6e-59 232.6 474 34.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.8e-56 223.0 190 63.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.6e-49 201.8 418 33.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.9e-39 166.0 212 42.5
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.3e-38 165.6 186 47.8
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.3e-38 162.9 102 79.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-37 162.5 414 31.4
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 3.2e-37 161.0 220 42.7
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 4.1e-37 160.6 321 38.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.1e-36 158.3 331 38.1
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.5e-36 157.5 235 41.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.9e-34 151.8 456 31.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-32 146.0 238 42.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.6e-31 141.4 191 39.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.4e-29 134.8 361 28.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.2e-29 134.0 321 35.5
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.5e-28 131.0 334 31.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 4.6e-28 130.6 181 42.0
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.7e-25 120.6 235 37.9
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.7e-25 120.6 104 64.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.4e-24 118.2 148 41.9
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.1e-24 117.9 349 30.4
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.4e-23 114.4 341 30.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.4e-21 108.2 214 36.4
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-20 105.9 325 31.1
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 4.0e-16 90.9 166 41.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 7.6e-15 86.7 149 37.6
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 6.4e-14 83.6 577 25.3
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.4e-14 83.2 80 48.8
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.4e-13 81.6 116 39.7
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.4e-13 81.6 127 37.8
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.2e-13 80.9 66 56.1
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 7.1e-13 80.1 86 46.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 4.6e-12 77.4 105 41.9
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.7e-11 73.2 105 41.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.1e-10 72.8 203 34.5
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-10 72.4 101 43.6
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-09 69.3 98 43.9
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.3e-08 63.9 108 40.7
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.9e-08 63.5 78 42.3
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.9e-06 58.2 46 56.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 6.4e-06 57.0 609 22.2


User provided reference genes

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