Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 2.3e-260 901.7 465 100.0
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.9e-183 645.6 465 72.0
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.3e-182 641.7 465 71.2
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.6e-179 632.5 468 66.5
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 8.3e-178 627.5 425 73.9
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 8.1e-157 557.8 467 61.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 2.5e-150 536.2 466 59.2
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.2e-146 523.1 467 57.6
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.3e-143 513.1 465 57.2
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 5.1e-143 511.9 466 56.4
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.5e-142 510.4 465 57.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.3e-142 509.2 464 55.4
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 9.6e-142 507.7 467 55.7
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 9.6e-142 507.7 466 54.5
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 4.8e-141 505.4 466 54.1
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 4.8e-141 505.4 467 57.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.1e-140 504.2 466 55.2
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.4e-140 503.8 467 56.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.4e-140 503.8 466 56.4
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 4.0e-140 502.3 465 53.8
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.5e-139 500.4 466 53.6
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.0e-139 500.0 472 53.0
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.6e-139 499.6 466 54.9
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.4e-137 493.0 500 53.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 7.1e-137 491.5 469 53.1
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 7.1e-137 491.5 466 53.9
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 7.9e-136 488.0 465 53.8
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.0e-135 487.6 516 49.8
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 8.7e-135 484.6 466 52.8
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.9e-134 483.4 466 54.3
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 3.3e-134 482.6 466 53.2
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.3e-134 482.6 466 51.3
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 7.4e-134 481.5 467 53.1
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.6e-133 480.3 470 53.8
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.6e-133 480.3 470 53.8
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.1e-133 479.9 462 53.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.8e-133 479.6 467 54.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.7e-133 479.2 470 53.6
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.1e-132 477.6 466 54.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.4e-132 477.2 460 52.8
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.4e-132 476.5 464 54.1
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 4.0e-132 475.7 465 52.5
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.3e-132 475.3 468 51.9
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.5e-131 473.8 464 52.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.0e-131 473.4 466 54.1
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.0e-131 473.4 466 52.8
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 4.5e-131 472.2 463 51.2
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.2e-130 469.9 466 52.8
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 2.9e-130 469.5 466 50.9
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 3.8e-130 469.2 469 51.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 4.9e-130 468.8 470 52.6
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.4e-129 467.2 469 50.7
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.2e-129 466.1 466 52.6
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 3.2e-129 466.1 468 52.6
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.6e-128 463.8 468 52.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.1e-128 463.4 461 53.4
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.7e-128 463.0 470 51.9
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.3e-127 460.7 469 50.3
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.3e-127 460.7 463 52.1
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 3.0e-127 459.5 466 50.9
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.1e-127 458.8 463 51.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 4.3e-126 455.7 468 50.2
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.6e-125 453.8 459 52.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.8e-125 453.0 464 51.3
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 4.8e-125 452.2 462 52.2
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.8e-124 450.3 468 50.4
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.2e-123 447.6 467 50.3
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.5e-123 447.2 462 50.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.3e-122 444.1 470 51.1
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-122 444.1 463 50.3
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.7e-122 443.7 462 50.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.9e-122 443.0 462 49.8
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 8.4e-122 441.4 466 49.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.1e-121 441.0 463 49.9
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 2.5e-121 439.9 463 50.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 4.2e-121 439.1 464 49.6
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.2e-120 437.6 463 49.5
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.2e-120 437.6 462 49.6
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.2e-120 437.6 426 52.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-120 436.8 464 50.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.7e-120 436.4 463 49.5
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.6e-120 435.6 437 51.7
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 6.1e-120 435.3 462 50.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.1e-120 435.3 463 49.5
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.0e-119 434.5 462 50.4
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.0e-119 434.5 437 51.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.8e-119 433.7 462 49.1
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.1e-119 432.2 469 50.1
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.5e-118 429.9 466 48.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 3.3e-118 429.5 469 49.0
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.6e-117 427.2 466 48.3
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.4e-116 424.1 461 49.7
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.4e-115 419.5 466 48.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 4.2e-113 412.5 419 49.2
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 4.3e-110 402.5 459 45.1
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.2e-107 394.4 496 44.8
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.0e-106 391.3 461 45.8
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 8.5e-106 388.3 460 45.0
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 4.2e-105 386.0 461 45.3
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-103 379.4 466 44.2
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.5e-102 377.5 448 46.7
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.5e-99 365.9 446 44.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.9e-99 365.5 443 45.6
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 4.5e-91 339.3 436 46.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 5.0e-90 335.9 296 58.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 4.5e-83 312.8 421 41.1
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.2e-75 288.1 488 37.7
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.9e-74 283.5 359 43.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.9e-74 283.5 359 43.2
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.9e-74 283.5 468 34.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.4e-68 264.6 525 34.3
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 3.2e-68 263.5 287 47.4
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.0e-63 248.4 366 41.0
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.2e-63 246.1 323 44.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 7.1e-52 209.1 497 30.8
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 8.9e-47 192.2 499 27.9
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.8e-39 167.9 365 31.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 4.9e-37 159.8 179 44.1
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.4e-36 158.3 363 30.9
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 2.4e-36 157.5 179 43.6
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 2.3e-34 151.0 114 60.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.5e-33 147.5 192 40.6
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 4.8e-32 143.3 363 29.2
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.3e-29 135.2 346 28.0
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.4e-28 129.8 227 33.5
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 7.1e-28 129.4 105 57.1
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-26 124.8 125 47.2
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-26 124.8 125 47.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-26 123.6 129 45.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.3e-24 118.6 357 28.0
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.1e-23 115.5 240 35.0
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 2.2e-21 107.8 128 44.5
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.3e-16 92.0 121 40.5
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 8.4e-13 79.3 84 45.2
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 8.4e-13 79.3 84 45.2
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.8e-08 64.3 69 44.9
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 8.2e-08 62.8 166 27.7
EL10Ac7g17723 Beta vulgaris HOM05D005294 ORTHO05D038989 1.1e-07 62.4 41 78.0
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 5.9e-06 56.6 40 65.0


User provided reference genes

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