Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.0e-203 712.2 358 100.0
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.8e-148 529.6 355 76.1
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 9.3e-145 517.3 363 71.6
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.0e-131 473.0 355 70.1
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 2.1e-128 463.0 359 63.8
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 6.7e-127 458.0 358 64.5
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 4.8e-125 451.8 372 60.8
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 5.3e-124 448.4 363 62.0
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 2.6e-123 446.0 363 62.5
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 3.4e-123 445.7 358 60.1
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 4.5e-123 445.3 357 63.6
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.7e-122 443.4 362 61.6
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.8e-122 442.2 358 62.6
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 5.0e-122 441.8 365 60.0
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 5.0e-122 441.8 358 63.1
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 5.0e-122 441.8 379 59.1
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.0e-122 441.8 363 62.3
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.9e-121 439.9 363 62.3
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 2.5e-121 439.5 367 61.6
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 3.6e-120 435.6 364 59.3
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 3.6e-120 435.6 363 59.2
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 6.1e-120 434.9 362 61.3
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.0e-119 434.1 361 61.5
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.4e-119 433.7 361 61.2
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.8e-119 433.3 362 61.3
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.8e-119 433.3 361 60.4
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.8e-119 433.3 363 59.0
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 6.7e-119 431.4 358 62.0
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 6.7e-119 431.4 358 62.3
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 1.1e-118 430.6 361 61.2
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.5e-118 430.3 363 59.8
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.5e-118 430.3 361 61.2
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.5e-118 430.3 358 59.5
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 5.7e-118 428.3 364 60.2
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 5.7e-118 428.3 361 60.4
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 5.7e-118 428.3 360 60.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 5.7e-118 428.3 359 61.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 5.7e-118 428.3 358 60.6
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 9.7e-118 427.6 383 58.5
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.7e-117 426.8 365 60.3
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.7e-117 426.8 362 59.9
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.2e-117 426.4 361 60.9
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 3.7e-117 425.6 365 59.2
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 4.8e-117 425.2 359 60.2
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 6.3e-117 424.9 365 59.2
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 8.2e-117 424.5 361 61.5
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.4e-116 422.9 388 57.7
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.4e-116 422.9 374 57.0
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 3.1e-116 422.5 359 58.5
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 9.1e-116 421.0 357 59.1
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.6e-115 420.2 359 59.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 3.5e-115 419.1 377 58.1
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 3.5e-115 419.1 364 58.5
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 4.5e-115 418.7 359 57.9
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 5.9e-115 418.3 361 59.3
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 7.7e-115 417.9 358 58.7
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 7.7e-115 417.9 370 57.3
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.1e-113 414.1 363 59.2
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.9e-113 413.3 360 58.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.5e-113 412.9 340 62.6
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.5e-113 412.9 359 56.5
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 2.5e-113 412.9 374 54.5
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 3.2e-113 412.5 365 57.5
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 7.2e-113 411.4 358 59.8
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 2.1e-112 409.8 362 55.8
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 4.7e-112 408.7 360 58.9
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.4e-111 407.1 373 56.8
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 1.4e-111 407.1 371 56.6
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.2e-110 404.1 372 55.9
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 4.4e-110 402.1 335 60.9
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 3.7e-109 399.1 353 58.9
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.1e-108 397.5 382 55.8
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.4e-108 397.1 354 57.6
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.0e-107 393.3 359 55.4
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.5e-105 387.1 343 59.5
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 7.2e-105 384.8 372 55.4
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 2.8e-101 372.9 426 49.3
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.4e-100 370.5 387 52.5
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 3.1e-100 369.4 333 58.9
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 1.6e-99 367.1 327 54.4
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.3e-98 363.2 373 50.7
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.6e-96 357.1 363 50.4
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 2.8e-96 356.3 356 54.2
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.4e-95 354.0 347 54.5
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.7e-93 347.1 324 54.9
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 8.3e-93 344.7 362 50.0
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 4.9e-85 318.9 230 70.4
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 6.0e-83 312.0 361 46.0
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 6.6e-82 308.5 230 66.5
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 2.5e-81 306.6 234 64.5
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 4.3e-81 305.8 234 64.5
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 1.8e-79 300.4 230 63.5
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.8e-79 300.4 359 44.8
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 8.9e-79 298.1 244 60.2
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 9.2e-76 288.1 328 48.8
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.2e-75 287.7 234 62.4
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 1.0e-74 284.6 234 64.1
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.7e-74 283.9 234 62.4
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 3.9e-74 282.7 355 46.2
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 3.9e-74 282.7 355 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 7.5e-70 268.5 302 47.7
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.4e-68 264.2 288 50.7
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.2e-63 245.7 360 41.7
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.9e-60 237.3 301 45.5
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.9e-57 227.3 301 41.9
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 6.6e-50 202.2 256 43.4
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 3.7e-40 169.9 127 62.2
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 8.1e-40 168.7 368 35.6
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 6.0e-35 152.5 326 32.5
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.8e-34 151.0 127 59.8
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 8.7e-34 148.7 126 57.1
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 4.8e-32 142.9 363 31.4
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.4e-31 140.6 129 53.5
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 2.2e-29 134.0 105 61.9
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 2.1e-27 127.5 90 66.7
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 5.1e-26 122.9 127 48.8
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.9e-22 109.4 104 51.9
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 5.9e-22 109.4 189 36.5
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.7e-21 107.8 110 50.0
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.4e-20 104.8 102 53.9
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.0e-17 94.4 87 55.2
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 8.5e-13 79.0 268 29.1
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.5e-12 77.4 78 47.4
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 9.4e-12 75.5 140 37.9
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 6.1e-11 72.8 96 43.8
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.3e-09 67.0 153 35.3
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 3.3e-09 67.0 153 35.3
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.3e-09 67.0 151 37.7
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 9.7e-09 65.5 145 35.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 2.8e-08 63.9 109 38.5
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 4.8e-08 63.2 139 36.0
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 6.3e-08 62.8 60 50.0
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.8e-07 61.2 135 34.8
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.8e-07 61.2 146 32.2
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 2.4e-07 60.8 109 37.6
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 3.1e-07 60.5 135 34.8
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 4.1e-07 60.1 136 33.1
Sc05g0002640 Simmondsia chinensis HOM05D006210 ORTHO05D007510 4.1e-07 60.1 35 82.9
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 4.1e-07 60.1 109 37.6
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 5.3e-07 59.7 133 33.1
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.3e-07 59.7 138 34.8
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 7.0e-07 59.3 129 34.9
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 7.0e-07 59.3 144 33.3
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 7.0e-07 59.3 139 35.3
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 7.0e-07 59.3 138 34.8
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 9.1e-07 58.9 109 39.4
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 9.1e-07 58.9 164 30.5
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 9.1e-07 58.9 144 31.9
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 9.1e-07 58.9 144 33.3
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 1.2e-06 58.5 167 31.7
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.2e-06 58.5 109 37.6
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 2.6e-06 57.4 136 32.4
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.6e-06 57.4 160 30.6
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 2.6e-06 57.4 139 34.5
Duzib211G0643 Durio zibethinus HOM05D000371 ORTHO05D001484 3.5e-06 57.0 157 33.8
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 3.5e-06 57.0 137 34.3
Duzib138G0528 Durio zibethinus HOM05D000371 ORTHO05D001484 4.5e-06 56.6 157 34.4
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 4.5e-06 56.6 136 32.4
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 5.9e-06 56.2 141 31.9
AagrBONN_evm.TU.Sc2ySwM_117.1559 Anthoceros agrestis HOM05D002042 ORTHO05D019658 5.9e-06 56.2 120 33.3
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 5.9e-06 56.2 140 31.4
Thecc.01G215200 Theobroma cacao HOM05D000371 ORTHO05D001484 5.9e-06 56.2 155 31.6
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 5.9e-06 56.2 133 32.3


User provided reference genes

Program Settings