Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g091360 Amaranthus hybridus HOM05D007554 ORTHO05D009569 7.5e-196 687.2 395 100.0
AUR62044070 Chenopodium quinoa HOM05D007554 ORTHO05D009569 7.8e-84 315.1 427 55.3
AUR62040182 Chenopodium quinoa HOM05D007554 ORTHO05D009569 1.2e-81 307.8 427 54.1
EL10Ac7g16728 Beta vulgaris HOM05D007554 ORTHO05D009569 1.0e-75 288.1 420 50.2
Thecc.05G076700 Theobroma cacao HOM05D007554 ORTHO05D009569 3.4e-39 166.8 442 32.4
GSVIVG01033729001 Vitis vinifera HOM05D007554 ORTHO05D009569 9.9e-39 165.2 384 30.7
Manes.09G058083 Manihot esculenta HOM05D007554 ORTHO05D009569 3.8e-38 163.3 431 31.3
Cpa.g.sc5.117 Carica papaya HOM05D007554 ORTHO05D009569 3.2e-37 160.2 389 29.8
Duzib106G2002 Durio zibethinus HOM05D007554 ORTHO05D009569 3.5e-36 156.8 436 30.7
Lj2A125T59 Lonicera japonica HOM05D007554 ORTHO05D009569 3.5e-36 156.8 408 32.1
HanXRQChr06g0181651 Helianthus annuus HOM05D007554 ORTHO05D009569 4.6e-36 156.4 409 31.3
FvH4_6g17340 Fragaria vesca HOM05D007554 ORTHO05D009569 2.3e-35 154.1 440 30.0
Potri.005G098400 Populus trichocarpa HOM05D007554 ORTHO05D009569 5.1e-35 152.9 444 29.5
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 8.7e-35 152.1 404 30.0
Atru.chr8.1675 Acer truncatum HOM05D007554 ORTHO05D009569 3.3e-34 150.2 443 27.5
CSS0026453 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 3.3e-34 150.2 423 28.8
Peaxi162Scf01063g00111 Petunia axillaris HOM05D007554 ORTHO05D009569 3.3e-34 150.2 442 28.7
CSS0026822 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 7.4e-34 149.1 423 28.8
FAN05G4577 Fragaria x ananassa HOM05D007554 ORTHO05D009569 7.4e-34 149.1 395 30.4
Gohir.D09G139300 Gossypium hirsutum HOM05D007554 ORTHO05D009569 1.3e-33 148.3 434 28.8
PGR142G2625 Punica granatum HOM05D007554 ORTHO05D009569 1.6e-33 147.9 391 29.9
FAN05G5377 Fragaria x ananassa HOM05D007554 ORTHO05D009569 2.1e-33 147.5 404 29.7
Gorai.006G159800 Gossypium raimondii HOM05D007554 ORTHO05D009569 2.8e-33 147.1 434 28.8
FAN05G0950 Fragaria x ananassa HOM05D000031 ORTHO05D001864 3.7e-33 146.7 395 30.4
TAR623G1240 Trochodendron aralioides HOM05D007554 ORTHO05D009569 1.1e-32 145.2 401 29.2
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 4.0e-32 143.3 390 31.8
Sc07g0004650 Simmondsia chinensis HOM05D007554 ORTHO05D009569 5.3e-32 142.9 419 35.1
QL07p041193 Quercus lobata HOM05D007554 ORTHO05D009569 2.0e-31 141.0 430 27.4
Ciclev10011754m.g Citrus clementina HOM05D007554 ORTHO05D009569 2.6e-31 140.6 408 33.3
Solyc09g008660.3 Solanum lycopersicum HOM05D007554 ORTHO05D009569 3.4e-31 140.2 346 32.4
TWI74G1006 Tripterygium wilfordii HOM05D007554 ORTHO05D009569 4.5e-31 139.8 447 27.7
PGSC0003DMG401012981 Solanum tuberosum HOM05D007554 ORTHO05D009569 7.6e-31 139.0 369 31.4
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 4.9e-30 136.3 342 30.4
Lsat_1_v5_gn_2_24301 Lactuca sativa HOM05D007554 ORTHO05D009569 4.9e-30 136.3 380 27.6
MD12G1101400 Malus domestica HOM05D007554 ORTHO05D009569 4.9e-30 136.3 400 30.2
Glyma.03G188800 Glycine max HOM05D007554 ORTHO05D009569 6.4e-30 136.0 424 27.6
Phvul.001G184200 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 8.4e-30 135.6 434 30.6
Cc06_g04860 Coffea canephora HOM05D007554 ORTHO05D009569 2.5e-29 134.0 412 31.8
Nitab4.5_0006709g0010 Nicotiana tabacum HOM05D007554 ORTHO05D009569 2.5e-29 134.0 444 34.2
Gohir.A09G143100 Gossypium hirsutum HOM05D007554 ORTHO05D009569 7.1e-29 132.5 399 28.3
Sabra05G0080800 Salix brachista HOM05D007554 ORTHO05D009569 1.2e-28 131.7 453 27.6
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 2.1e-28 131.0 355 36.3
Sopen09g003460 Solanum pennellii HOM05D007554 ORTHO05D009569 2.7e-28 130.6 345 36.2
Aqoxy2G01532 Aquilegia oxysepala HOM05D007554 ORTHO05D009569 4.6e-28 129.8 423 28.4
Dinv35842 Davidia involucrata HOM05D007554 ORTHO05D009569 4.6e-28 129.8 431 33.2
Hma1.2p1_1578F.1_g291800 Hydrangea macrophylla HOM05D007554 ORTHO05D009569 4.6e-28 129.8 405 36.0
Prupe.7G122100 Prunus persica HOM05D007554 ORTHO05D009569 4.6e-28 129.8 396 27.5
CiPaw.09G006000 Carya illinoinensis HOM05D007554 ORTHO05D009569 3.0e-27 127.1 323 30.0
Glyma.13G148500 Glycine max HOM05D007554 ORTHO05D009569 3.0e-27 127.1 412 27.9
Glyma.10G063900 Glycine max HOM05D007554 ORTHO05D009569 1.5e-26 124.8 411 26.0
Glyma.19G189000 Glycine max HOM05D007554 ORTHO05D009569 3.3e-26 123.6 432 26.4
RcHm_v2.0_Chr3g0471481 Rosa chinensis HOM05D007554 ORTHO05D009569 5.6e-26 122.9 429 28.2
Medtr1g061840 Medicago truncatula HOM05D007554 ORTHO05D009569 7.4e-26 122.5 404 28.7
THA.LOC104823478 Tarenaya hassleriana HOM05D007554 ORTHO05D009569 3.7e-25 120.2 423 25.8
VMungo0720G0941 Vigna mungo HOM05D007554 ORTHO05D009569 8.2e-25 119.0 382 27.7
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.1e-24 118.6 290 30.0
TPR.G30363 Trifolium pratense HOM05D007554 ORTHO05D009569 2.0e-23 114.4 407 32.7
Phvul.007G225500 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 1.7e-22 111.3 411 26.3
AL4G32830 Arabidopsis lyrata HOM05D007554 ORTHO05D009569 2.2e-22 110.9 408 26.5
CAN.G1830.10 Capsicum annuum HOM05D007554 ORTHO05D009569 2.9e-22 110.5 293 32.1
BcaB02g09343 Brassica carinata HOM05D007554 ORTHO05D009569 6.5e-22 109.4 417 25.4
vmacro08807 Vaccinium macrocarpon HOM05D007554 ORTHO05D009569 1.9e-21 107.8 427 27.6
CARHR130930 Cardamine hirsuta HOM05D007554 ORTHO05D009569 3.2e-21 107.1 406 27.6
Lj1g0019279 Lotus japonicus HOM05D007554 ORTHO05D009569 3.2e-21 107.1 422 26.3
Nn2g13923 Nelumbo nucifera HOM05D007554 ORTHO05D009569 1.6e-20 104.8 443 25.5
DCAR_015020 Daucus carota HOM05D007554 ORTHO05D009569 2.7e-20 104.0 426 28.2
BcaC02g11778 Brassica carinata HOM05D007554 ORTHO05D009569 3.5e-20 103.6 399 24.6
C04p11490 Brassica napus HOM05D007554 ORTHO05D009569 3.5e-20 103.6 399 24.6
BolC4t22799H Brassica oleracea HOM05D007554 ORTHO05D009569 3.5e-20 103.6 399 24.6
Actinidia31304 Actinidia chinensis HOM05D007554 ORTHO05D009569 6.1e-20 102.8 305 32.1
Psat0s3550g0120 Pisum sativum HOM05D007554 ORTHO05D009569 6.1e-20 102.8 410 26.6
BraA05t19878Z Brassica rapa HOM05D007554 ORTHO05D009569 7.9e-20 102.4 403 24.1
Nitab4.5_0004281g0070 Nicotiana tabacum HOM05D007554 ORTHO05D009569 7.9e-20 102.4 441 29.5
arahy.Tifrunner.gnm1.ann1.5H9RXZ Arachis hypogaea HOM05D007554 ORTHO05D009569 1.3e-19 101.7 424 25.7
arahy.Tifrunner.gnm1.ann1.NAN5QV Arachis hypogaea HOM05D007554 ORTHO05D009569 1.3e-19 101.7 424 25.7
Carub.0004s1847 Capsella rubella HOM05D007554 ORTHO05D009569 1.3e-19 101.7 401 26.9
Haze_19488 Corylus avellana HOM05D000140 ORTHO05D000087 1.8e-19 101.3 226 33.2
Thhalv10017640m.g Eutrema salsugineum HOM05D007554 ORTHO05D009569 1.8e-19 101.3 372 25.5
A05p09220 Brassica napus HOM05D007554 ORTHO05D009569 2.3e-19 100.9 403 23.8
MELO3C009416.2 Cucumis melo HOM05D007554 ORTHO05D009569 2.3e-19 100.9 214 34.6
CsaV3_3G036620 Cucumis sativus L. HOM05D007554 ORTHO05D009569 3.0e-19 100.5 214 35.0
ClCG10G019580 Citrullus lanatus HOM05D000031 ORTHO05D001864 8.7e-19 99.0 209 34.0
Lj5g0018631 Lotus japonicus HOM05D007554 ORTHO05D009569 3.3e-18 97.1 429 27.7
Sed0015840 Sechium edule HOM05D000031 ORTHO05D001864 3.3e-18 97.1 197 35.5
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 4.3e-18 96.7 432 24.5
VMungo1383G1881 Vigna mungo HOM05D007554 ORTHO05D009569 1.3e-17 95.1 434 30.2
Aa31LG5G21850 Aethionema arabicum HOM05D007554 ORTHO05D009569 1.1e-16 92.0 407 25.8
MBI04_g22191_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D009569 2.4e-16 90.9 333 30.9
Lalb_Chr01g0018501 Lupinus albus HOM05D007554 ORTHO05D009569 6.9e-16 89.4 384 27.1
Eucgr.K02413 Eucalyptus grandis HOM05D007554 ORTHO05D009569 1.2e-15 88.6 401 25.2
AT2G36650 Arabidopsis thaliana HOM05D007554 ORTHO05D009569 1.0e-14 85.5 290 25.2
PSO801G0154 Papaver somniferum HOM05D007554 ORTHO05D009569 1.1e-13 82.0 207 30.9
Sp4g18930 Schrenkiella parvula HOM05D007554 ORTHO05D009569 2.5e-13 80.9 364 24.2
VMungo0331G1583 Vigna mungo HOM05D000566 ORTHO05D004798 9.4e-13 79.0 233 25.3
Haze_19498 Corylus avellana HOM05D000031 ORTHO05D001864 2.1e-12 77.8 260 27.7
arahy.Tifrunner.gnm1.ann1.WUL3RA Arachis hypogaea HOM05D007554 ORTHO05D009569 7.9e-12 75.9 389 27.5
Lalb_Chr04g0263011 Lupinus albus HOM05D000566 ORTHO05D004798 7.9e-12 75.9 247 23.1
Thecc.06G102300 Theobroma cacao HOM05D000566 ORTHO05D004798 1.0e-11 75.5 240 22.9
arahy.Tifrunner.gnm1.ann1.561HRF Arachis hypogaea HOM05D000566 ORTHO05D004798 3.0e-11 73.9 241 24.5
arahy.Tifrunner.gnm1.ann1.TQ9G2A Arachis hypogaea HOM05D007554 ORTHO05D009569 3.9e-11 73.6 389 28.0
Gohir.D03G057500 Gossypium hirsutum HOM05D000566 ORTHO05D004798 6.7e-11 72.8 242 22.7
Gorai.003G061000 Gossypium raimondii HOM05D000566 ORTHO05D004798 6.7e-11 72.8 242 22.7
BolC3t14766H Brassica oleracea HOM05D007554 ORTHO05D009569 1.1e-10 72.0 227 29.1
Glyma.08G199600 Glycine max HOM05D000566 ORTHO05D004798 4.3e-10 70.1 237 22.8
GSVIVG01016952001 Vitis vinifera HOM05D000566 ORTHO05D004798 9.7e-10 68.9 228 24.6
Actinidia21725 Actinidia chinensis HOM05D000566 ORTHO05D004798 1.7e-09 68.2 242 20.7
MSTRG.22623 Avicennia marina HOM05D000566 ORTHO05D004798 1.7e-09 68.2 230 23.0
Duzib235G0481 Durio zibethinus HOM05D000566 ORTHO05D004798 1.7e-09 68.2 242 21.9
Gohir.A02G116601 Gossypium hirsutum HOM05D000566 ORTHO05D004798 1.7e-09 68.2 242 33.1
Phvul.010G143700 Phaseolus vulgaris HOM05D000566 ORTHO05D004798 1.7e-09 68.2 232 22.8
Ciclev10025160m.g Citrus clementina HOM05D000566 ORTHO05D004798 2.8e-09 67.4 241 23.2
DCAR_007592 Daucus carota HOM05D000566 ORTHO05D004798 2.8e-09 67.4 245 24.5
Medtr8g014900 Medicago truncatula HOM05D000566 ORTHO05D004798 2.8e-09 67.4 358 20.4
PSO339G0406 Papaver somniferum HOM05D007554 ORTHO05D009569 2.8e-09 67.4 137 30.7
Potri.003G047200 Populus trichocarpa HOM05D000566 ORTHO05D004798 2.8e-09 67.4 270 21.9
ATR0026G023 Amborella trichopoda HOM05D000566 ORTHO05D004798 3.7e-09 67.0 234 23.9
CiPaw.01G229800 Carya illinoinensis HOM05D000566 ORTHO05D004798 3.7e-09 67.0 236 23.3
HPP92_003963 Vanilla planifolia HOM05D000566 ORTHO05D004798 4.8e-09 66.6 329 22.8
BraA03t11273Z Brassica rapa HOM05D007554 ORTHO05D009569 6.3e-09 66.2 298 25.8
Duzib192G0109 Durio zibethinus HOM05D000566 ORTHO05D004798 6.3e-09 66.2 268 22.4
Sed0017098 Sechium edule HOM05D000566 ORTHO05D004798 8.2e-09 65.9 235 23.4
Glyma.15G021100 Glycine max HOM05D000566 ORTHO05D004798 1.1e-08 65.5 240 21.7
Lj9A515T34 Lonicera japonica HOM05D000566 ORTHO05D004798 1.1e-08 65.5 239 22.6
arahy.Tifrunner.gnm1.ann1.YI8MDQ Arachis hypogaea HOM05D000566 ORTHO05D004798 1.4e-08 65.1 247 22.7
Sabra03G0019300 Salix brachista HOM05D000566 ORTHO05D004798 1.8e-08 64.7 235 20.9
ECA232G4328 Erigeron canadensis HOM05D000566 ORTHO05D004798 2.4e-08 64.3 325 21.2
Phvul.005G164900 Phaseolus vulgaris HOM05D000566 ORTHO05D004798 2.4e-08 64.3 240 22.5
EL10Ac9g21179 Beta vulgaris HOM05D000566 ORTHO05D004798 4.1e-08 63.5 243 22.6
Dinv37962 Davidia involucrata HOM05D000566 ORTHO05D004798 4.1e-08 63.5 234 22.2
Ah.01g005910 Amaranthus hybridus HOM05D000566 ORTHO05D004798 5.3e-08 63.2 235 23.0
BcaC01g05644 Brassica carinata HOM05D007554 ORTHO05D009569 5.3e-08 63.2 227 27.8
Glyma.13G353200 Glycine max HOM05D000566 ORTHO05D004798 5.3e-08 63.2 240 21.7
RcHm_v2.0_Chr2g0141111 Rosa chinensis HOM05D000566 ORTHO05D004798 5.3e-08 63.2 241 24.5
Nitab4.5_0000300g0150 Nicotiana tabacum HOM05D000566 ORTHO05D004798 6.9e-08 62.8 253 24.5
Nitab4.5_0001991g0050 Nicotiana tabacum HOM05D000566 ORTHO05D004798 6.9e-08 62.8 236 24.2
TPR.G15135 Trifolium pratense HOM05D000566 ORTHO05D004798 6.9e-08 62.8 236 22.5
ECA247G0904 Erigeron canadensis HOM05D000566 ORTHO05D004798 9.1e-08 62.4 239 24.7
Gorai.009G138100 Gossypium raimondii HOM05D000566 ORTHO05D004798 9.1e-08 62.4 258 21.7
Rhsim08G0228800 Rhododendron simsii HOM05D000566 ORTHO05D004798 1.2e-07 62.0 239 21.3
CANSAT56G2153 Cannabis sativa HOM05D000566 ORTHO05D004798 1.5e-07 61.6 237 24.1
AUR62031956 Chenopodium quinoa HOM05D000566 ORTHO05D004798 1.5e-07 61.6 267 25.1
Cfa003630 Carpinus fangiana HOM05D000566 ORTHO05D004798 2.0e-07 61.2 280 22.5
ClCG09G000280 Citrullus lanatus HOM05D000566 ORTHO05D004798 2.0e-07 61.2 237 24.9
Lj3g0025101 Lotus japonicus HOM05D000566 ORTHO05D004798 2.0e-07 61.2 240 20.0
VMungo1080G1237 Vigna mungo HOM05D000566 ORTHO05D004798 2.0e-07 61.2 240 22.5
MSTRG.11016 Avicennia marina HOM05D000566 ORTHO05D004798 2.6e-07 60.8 266 21.8
Ca_01174_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 2.6e-07 60.8 242 21.1
Sed0020325 Sechium edule HOM05D000566 ORTHO05D004798 2.6e-07 60.8 234 23.1
C03p23720 Brassica napus HOM05D007554 ORTHO05D009569 3.4e-07 60.5 226 27.4
COL.COLO4_30537 Corchorus olitorius HOM05D000428 ORTHO05D004798 3.4e-07 60.5 240 20.4
Medtr2g100630 Medicago truncatula HOM05D000566 ORTHO05D004798 4.5e-07 60.1 232 19.0
A03p20230 Brassica napus HOM05D007554 ORTHO05D009569 5.9e-07 59.7 309 25.2
Haze_15871 Corylus avellana HOM05D000566 ORTHO05D004798 5.9e-07 59.7 240 21.7
SGA_v2.0_scaffold265G46055 Striga asiatica HOM05D000566 ORTHO05D004798 5.9e-07 59.7 215 24.7
BcaB01g03819 Brassica carinata HOM05D007554 ORTHO05D009569 7.7e-07 59.3 320 24.4
AUR62022243 Chenopodium quinoa HOM05D000566 ORTHO05D004798 7.7e-07 59.3 264 23.1
Ca_23280_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 7.7e-07 59.3 291 22.0
Lalb_Chr22g0351621 Lupinus albus HOM05D000566 ORTHO05D004798 1.0e-06 58.9 229 21.8
MBI01_g01247_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D004798 1.0e-06 58.9 236 21.2
Sc12g0010040 Simmondsia chinensis HOM05D000566 ORTHO05D004798 1.0e-06 58.9 229 22.3
Gohir.D05G134500 Gossypium hirsutum HOM05D000566 ORTHO05D004798 1.3e-06 58.5 260 21.9
QL02p056177 Quercus lobata HOM05D000566 ORTHO05D004798 1.3e-06 58.5 235 23.8
QL05p018774 Quercus lobata HOM05D000566 ORTHO05D004798 1.3e-06 58.5 235 23.8
Carub.0001s4099 Capsella rubella HOM05D000566 ORTHO05D004798 2.2e-06 57.8 233 23.2
Cfa003628 Carpinus fangiana HOM05D000566 ORTHO05D004798 2.2e-06 57.8 274 24.1
HanXRQChr02g0032071 Helianthus annuus HOM05D000566 ORTHO05D004798 2.2e-06 57.8 341 22.6
Nitab4.5_0005085g0060 Nicotiana tabacum HOM05D000566 ORTHO05D004798 2.9e-06 57.4 234 21.4
Gohir.D06G198400 Gossypium hirsutum HOM05D000566 ORTHO05D004798 3.8e-06 57.0 249 20.1
Hma1.2p1_0430F.1_g151220 Hydrangea macrophylla HOM05D000566 ORTHO05D004798 3.8e-06 57.0 287 22.0
Hma1.2p1_1621F.1_g294040 Hydrangea macrophylla HOM05D000566 ORTHO05D004798 3.8e-06 57.0 276 21.4
Haze_15875 Corylus avellana HOM05D000566 ORTHO05D004798 5.0e-06 56.6 238 20.6
Lsat_1_v5_gn_1_36681 Lactuca sativa HOM05D000566 ORTHO05D004798 5.0e-06 56.6 240 23.3
Hund00707 Selenicereus undatus HOM05D000566 ORTHO05D004798 5.0e-06 56.6 257 25.3
Os05g0185800 Oryza sativa ssp. japonica HOM05D000566 ORTHO05D004798 6.5e-06 56.2 339 20.9
vmacro18840 Vaccinium macrocarpon HOM05D000566 ORTHO05D004798 6.5e-06 56.2 266 21.1
BcaC02g11783 Brassica carinata HOM05D007554 ORTHO05D009569 8.5e-06 55.8 154 28.6
Lj3A1020T61 Lonicera japonica HOM05D000566 ORTHO05D000686 8.5e-06 55.8 354 22.9


User provided reference genes

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