Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.1e-35 151.8 73 100.0
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.8e-31 138.7 71 90.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.8e-31 138.7 71 90.1
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.3e-31 137.1 73 87.7
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.2e-30 136.0 97 73.2
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 84.9
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 82.2
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.5e-30 134.4 73 83.6
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 4.5e-30 134.0 73 86.3
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 82.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 86.3
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 88.7
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 84.9
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 86.5
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.7e-29 132.1 73 84.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.2e-29 131.7 73 84.9
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.9e-29 131.3 73 84.9
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.9e-29 131.3 74 86.5
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.9e-29 131.3 74 86.5
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.9e-29 131.3 74 86.5
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.9e-29 131.3 73 83.6
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.9e-29 131.3 71 85.9
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-29 131.0 71 87.3
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-29 131.0 71 87.3
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-29 131.0 71 87.3
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.8e-29 131.0 73 84.9
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.8e-29 131.0 73 84.9
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.5e-29 130.2 74 85.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.5e-29 130.2 74 85.1
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 8.5e-29 129.8 71 85.9
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.5e-29 129.8 71 85.9
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 8.5e-29 129.8 71 85.9
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 83.8
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 83.6
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 84.9
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 83.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 82.2
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 84.5
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 3.2e-28 127.9 73 80.8
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.2e-28 127.5 73 80.8
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.2e-28 127.5 74 82.4
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.5e-28 127.1 73 82.2
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.2e-28 126.7 76 81.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 7.2e-28 126.7 73 80.8
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 7.2e-28 126.7 73 82.2
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 9.4e-28 126.3 73 79.5
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.6e-27 125.6 71 80.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 79.5
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 82.2
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 80.3
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.7e-27 124.8 71 77.5
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.7e-27 124.8 74 81.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.7e-27 124.8 74 81.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.7e-27 124.8 67 85.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.7e-27 124.8 73 82.2
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.7e-27 124.8 73 78.1
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 4.7e-27 124.0 69 84.1
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 4.7e-27 124.0 71 84.5
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.1e-27 123.6 73 82.2
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 8.0e-27 123.2 73 79.5
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 8.0e-27 123.2 73 79.5
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.0e-26 122.9 74 77.0
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.0e-26 122.9 71 78.9
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.4e-26 122.5 71 78.9
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.4e-26 122.5 71 78.9
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.4e-26 122.5 71 80.3
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 77.5
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 76.7
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 77.0
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 77.0
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 4.0e-26 120.9 73 80.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.0e-26 120.9 71 78.9
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 5.2e-26 120.6 71 80.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 76.7
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 6.8e-26 120.2 73 79.5
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.8e-26 120.2 71 83.1
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 8.8e-26 119.8 73 76.7
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.2e-25 119.4 71 80.3
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.2e-25 119.4 75 74.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 75.3
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 75.3
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.6e-25 118.2 71 78.9
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.6e-25 118.2 71 78.9
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 4.4e-25 117.5 73 76.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.4e-25 117.5 71 76.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 5.7e-25 117.1 69 78.3
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.5e-25 116.7 73 75.3
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 9.8e-25 116.3 57 91.2
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.3e-24 115.9 71 78.9
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-24 115.5 71 78.9
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.7e-24 115.5 71 78.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.2e-24 115.2 69 78.3
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.2e-24 115.2 71 76.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.2e-24 115.2 73 72.6
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 2.8e-24 114.8 95 62.1
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 2.8e-24 114.8 74 74.3
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.7e-24 114.4 68 76.5
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 74.0
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.3e-24 113.6 101 57.4
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 75.3
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-23 112.5 79 69.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 71.2
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 71.2
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 71.2
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 71.2
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 71.2
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.1e-23 110.9 100 58.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 4.1e-23 110.9 65 80.0
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 73 72.6
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 5.4e-23 110.5 71 74.6
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.4e-23 110.5 73 68.5
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 5.4e-23 110.5 56 83.9
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 9.1e-23 109.8 73 72.6
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 9.1e-23 109.8 73 72.6
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 9.1e-23 109.8 63 79.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.7e-22 108.2 71 71.8
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.7e-22 108.2 90 62.2
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.5e-22 107.5 74 71.6
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.5e-22 107.5 56 83.9
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 5.9e-22 107.1 61 77.0
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.0e-21 106.3 61 75.4
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 74.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.9e-21 104.8 71 73.2
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 74.6
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.1e-20 102.8 66 72.7
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 73 65.8
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 73 67.1
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 63 74.6
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 83 62.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 7.2e-20 100.1 63 73.0
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.2e-20 100.1 56 80.4
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 9.5e-20 99.8 63 73.0
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 9.5e-20 99.8 63 73.0
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 9.5e-20 99.8 63 73.0
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 9.5e-20 99.8 63 73.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 9.5e-20 99.8 63 73.0
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.2e-19 99.4 63 73.0
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.2e-19 99.4 57 82.5
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-19 99.4 56 80.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.2e-19 99.4 56 80.4
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 8.0e-19 96.7 58 72.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 64 68.8
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 64 68.8
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 3.0e-18 94.7 56 73.2
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 3.0e-18 94.7 56 75.0
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-17 92.4 65 66.2
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.5e-17 92.4 65 66.2
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.0e-17 92.0 56 78.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.6e-17 91.7 56 78.6
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.4e-17 91.3 66 60.6
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 9.8e-17 89.7 56 71.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 9.8e-17 89.7 124 41.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-16 89.4 72 62.5
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.3e-16 89.4 89 50.6
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.1e-15 86.3 54 74.1
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.4e-15 85.9 56 71.4
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.8e-15 85.5 56 71.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 5.4e-15 84.0 56 67.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.0e-15 83.6 56 66.1
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-14 82.8 55 65.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 60.7
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.6e-14 82.4 67 50.7
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.6e-14 82.4 62 54.8
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.7e-14 81.6 63 58.7
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 5.9e-14 80.5 56 67.9
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.9e-12 75.5 49 67.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.6e-12 73.9 40 77.5
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.6e-12 73.9 52 69.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.6e-11 72.4 51 58.8
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-11 72.0 55 61.8
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-11 72.0 55 61.8
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.1e-11 72.0 42 78.6
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.0e-11 70.1 41 78.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 8.9e-10 66.6 38 73.7
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.0e-09 65.5 34 85.3
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.4e-07 59.3 51 52.9
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.4e-07 58.5 40 65.0
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 1.2e-06 56.2 52 50.0


User provided reference genes

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