Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 1.8e-84 315.8 159 100.0
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 3.1e-47 192.2 160 63.1
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 3.4e-46 188.7 160 62.5
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 4.4e-30 135.2 163 47.2
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.3e-29 133.7 161 43.5
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 2.4e-28 129.4 161 41.0
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.4e-28 129.4 160 42.5
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 3.2e-28 129.0 163 41.7
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 3.2e-28 129.0 162 45.1
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 4.1e-28 128.6 163 44.2
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-28 128.6 160 41.9
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-28 128.6 160 42.5
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 4.1e-28 128.6 161 41.6
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 5.4e-28 128.3 158 45.6
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 7.1e-28 127.9 159 43.4
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 9.2e-28 127.5 166 45.8
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 1.6e-27 126.7 167 44.3
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 2.1e-27 126.3 162 45.1
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 2.1e-27 126.3 161 45.3
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 2.1e-27 126.3 161 42.2
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 2.7e-27 125.9 166 43.4
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 4.6e-27 125.2 158 44.3
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 4.6e-27 125.2 162 40.7
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 4.6e-27 125.2 163 43.6
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.3e-26 122.9 165 38.2
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.9e-26 122.1 165 38.2
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 6.6e-26 121.3 161 42.2
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 8.6e-26 120.9 162 42.6
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.6e-26 120.9 165 38.2
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.5e-25 120.2 160 45.0
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 2.5e-25 119.4 165 41.2
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.5e-25 119.4 159 39.0
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.3e-25 119.0 163 38.0
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 5.6e-25 118.2 165 40.6
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.6e-25 118.2 162 40.7
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 7.3e-25 117.9 166 41.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 7.3e-25 117.9 164 37.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 9.6e-25 117.5 160 41.2
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 9.6e-25 117.5 160 40.6
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-24 117.1 163 40.5
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.2e-24 117.1 164 40.2
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.6e-24 116.7 162 40.1
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 1.6e-24 116.7 164 40.9
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 2.1e-24 116.3 160 40.6
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 2.8e-24 115.9 159 40.3
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 3.6e-24 115.5 163 39.9
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 4.7e-24 115.2 163 41.7
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 4.7e-24 115.2 163 41.1
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 4.7e-24 115.2 163 41.1
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 6.2e-24 114.8 165 40.0
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.2e-24 114.8 164 39.6
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 6.2e-24 114.8 162 42.6
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.1e-24 114.4 126 42.1
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.1e-23 114.0 120 45.0
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.4e-23 113.6 164 40.2
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.4e-23 113.6 166 39.2
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.8e-23 113.2 168 38.1
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.8e-23 113.2 161 40.4
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 8.9e-23 110.9 161 42.2
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.5e-22 110.2 159 41.5
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 2.0e-22 109.8 165 38.2
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 2.6e-22 109.4 167 38.3
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 3.4e-22 109.0 156 40.4
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 4.4e-22 108.6 159 39.0
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 4.4e-22 108.6 136 48.5
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 5.8e-22 108.2 161 35.4
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.3e-21 107.1 167 40.1
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.7e-21 106.7 193 40.9
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.7e-21 106.7 166 38.0
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 2.9e-21 105.9 175 38.9
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.9e-21 105.9 167 38.9
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 4.9e-21 105.1 167 37.7
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 1.9e-20 103.2 179 37.4
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 7.1e-20 101.3 164 39.0
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 2.1e-19 99.8 133 42.9
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 2.1e-19 99.8 133 42.9
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 3.5e-19 99.0 160 34.4
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 6.0e-19 98.2 161 42.9
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 6.0e-19 98.2 165 37.6
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 7.8e-19 97.8 160 37.5
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 7.8e-19 97.8 183 33.9
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.3e-18 97.1 152 36.2
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 3.0e-18 95.9 182 35.7
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 3.9e-18 95.5 188 35.1
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.1e-17 94.0 176 33.5
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 1.9e-17 93.2 176 34.1
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 1.9e-17 93.2 176 34.1
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 7.3e-17 91.3 178 31.5
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 9.6e-17 90.9 188 34.0
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 9.6e-17 90.9 178 33.7
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 9.6e-17 90.9 178 36.0
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 9.6e-17 90.9 162 35.8
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 9.6e-17 90.9 161 34.8
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 9.6e-17 90.9 160 36.2
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 1.3e-16 90.5 166 35.5
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.6e-16 90.1 176 33.0
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 2.1e-16 89.7 180 36.1
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 2.1e-16 89.7 171 37.4
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 2.8e-16 89.4 166 35.5
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 2.8e-16 89.4 163 34.4
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.8e-16 89.4 98 46.9
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 3.6e-16 89.0 177 32.8
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 3.6e-16 89.0 179 34.6
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 4.8e-16 88.6 179 33.0
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 4.8e-16 88.6 169 35.5
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 4.8e-16 88.6 166 34.9
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 8.1e-16 87.8 161 35.4
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.1e-15 87.4 178 32.6
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 1.4e-15 87.0 181 34.8
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 1.4e-15 87.0 181 34.8
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.4e-15 87.0 180 37.2
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 2.4e-15 86.3 172 33.7
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.4e-15 86.3 180 32.2
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 3.1e-15 85.9 172 33.1
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 3.1e-15 85.9 187 33.2
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 5.3e-15 85.1 181 32.6
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 7.6e-14 81.3 172 33.7
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 2.9e-13 79.3 142 35.9
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 3.8e-13 79.0 116 41.4
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 1.4e-12 77.0 163 35.0
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 1.9e-12 76.6 163 33.7
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 2.4e-12 76.3 195 29.2
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 4.2e-12 75.5 143 34.3
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 2.1e-11 73.2 175 30.9
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 2.7e-11 72.8 149 34.2
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 3.5e-11 72.4 148 35.8
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 3.5e-11 72.4 148 35.8
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 1.3e-10 70.5 161 31.7
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.7e-10 70.1 122 39.3
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.9e-10 68.9 160 34.4
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 5.1e-10 68.6 129 34.9
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 6.6e-10 68.2 161 34.2
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 2.5e-09 66.2 173 28.9
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 4.3e-09 65.5 131 28.2
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 4.3e-09 65.5 59 50.8
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 1.3e-08 63.9 131 31.3
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.3e-08 63.9 121 30.6
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 2.1e-08 63.2 192 28.1
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 2.1e-08 63.2 192 28.1
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 3.6e-08 62.4 132 31.8
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 4.8e-08 62.0 166 30.1
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.1e-07 60.8 165 30.3
Nitab4.5_0009023g0020 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.1e-07 60.8 126 36.5
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.4e-07 60.5 152 30.3
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 2.4e-07 59.7 171 28.7
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 2.4e-07 59.7 164 30.5
SGA_v2.0_scaffold35G14068 Striga asiatica HOM05D002916 ORTHO05D003152 2.4e-07 59.7 105 41.0
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 2.4e-07 59.7 163 30.7
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 3.1e-07 59.3 132 28.8
ECA236G4089 Erigeron canadensis HOM05D002916 ORTHO05D003152 5.3e-07 58.5 164 31.1
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 6.9e-07 58.2 161 28.6
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 9.0e-07 57.8 149 28.9
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.0e-07 57.8 165 29.7
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 9.0e-07 57.8 147 29.3
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 2.0e-06 56.6 119 30.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 2.6e-06 56.2 150 27.3
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 3.4e-06 55.8 154 29.9
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 3.4e-06 55.8 76 42.1
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 5.8e-06 55.1 70 51.4
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 5.8e-06 55.1 161 29.2
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 9.9e-06 54.3 148 30.4
Mapoly0171s0007 Marchantia polymorpha HOM05D018206 ORTHO05D013164 9.9e-06 54.3 179 29.6


User provided reference genes

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