Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 2.3e-38 161.8 83 100.0
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 5.2e-22 107.5 97 59.8
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 4.4e-21 104.4 96 57.3
AUR62037026 Chenopodium quinoa HOM05D007825 ORTHO05D009693 3.1e-19 98.2 96 55.2
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 1.9e-16 89.0 94 52.1
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 1.2e-13 79.7 88 53.4
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 2.0e-13 79.0 79 49.4
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 3.4e-13 78.2 88 53.4
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 4.4e-13 77.8 88 53.4
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 5.7e-13 77.4 84 50.0
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 9.8e-13 76.6 87 48.3
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 9.8e-13 76.6 95 48.4
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 1.3e-12 76.3 88 46.6
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 1.7e-12 75.9 84 48.8
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 1.7e-12 75.9 87 46.0
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 2.2e-12 75.5 84 50.0
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 2.2e-12 75.5 91 47.3
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 6.3e-12 73.9 84 47.6
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 1.1e-11 73.2 87 44.8
DCAR_013400 Daucus carota HOM05D007825 ORTHO05D009693 1.4e-11 72.8 85 44.7
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 1.4e-11 72.8 86 46.5
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 1.4e-11 72.8 89 44.9
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.8e-11 72.4 87 46.0
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 2.4e-11 72.0 87 47.1
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 3.1e-11 71.6 84 48.8
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 4.1e-11 71.2 80 51.2
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 4.1e-11 71.2 88 45.5
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 5.4e-11 70.9 89 44.9
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 5.4e-11 70.9 92 43.5
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 5.4e-11 70.9 89 46.1
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 7.0e-11 70.5 100 42.0
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 7.0e-11 70.5 86 45.3
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 9.1e-11 70.1 84 48.8
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 9.1e-11 70.1 87 44.8
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 1.2e-10 69.7 87 43.7
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 1.2e-10 69.7 87 43.7
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 1.6e-10 69.3 85 44.7
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 1.6e-10 69.3 88 44.3
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 2.7e-10 68.6 85 41.2
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 3.5e-10 68.2 84 44.0
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 3.5e-10 68.2 101 42.6
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 3.5e-10 68.2 83 43.4
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 4.5e-10 67.8 86 45.3
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 4.5e-10 67.8 84 44.0
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 4.5e-10 67.8 96 40.6
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 4.5e-10 67.8 88 43.2
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 4.5e-10 67.8 100 44.0
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 7.7e-10 67.0 84 44.0
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 7.7e-10 67.0 90 41.1
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 7.7e-10 67.0 86 43.0
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 7.7e-10 67.0 98 38.8
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 1.3e-09 66.2 89 42.7
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 1.7e-09 65.9 90 44.4
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 1.7e-09 65.9 89 41.6
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 5.0e-09 64.3 86 40.7
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 6.5e-09 63.9 89 41.6
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 8.5e-09 63.5 88 39.8
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 8.5e-09 63.5 84 42.9
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 8.5e-09 63.5 84 42.9
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 1.5e-08 62.8 94 42.6
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 1.5e-08 62.8 90 40.0
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 1.9e-08 62.4 91 46.2
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 2.5e-08 62.0 87 46.0
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 3.2e-08 61.6 86 43.0
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 3.2e-08 61.6 86 43.0
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 3.2e-08 61.6 82 45.1
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.2e-08 61.6 84 41.7
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 5.5e-08 60.8 87 42.5
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 5.5e-08 60.8 94 35.1
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 7.2e-08 60.5 86 43.0
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 7.2e-08 60.5 84 40.5
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 1.6e-07 59.3 96 36.5
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 2.7e-07 58.5 91 41.8
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 4.7e-07 57.8 84 40.5
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 1.4e-06 56.2 90 35.6
Hma1.2p1_3516F.1_g336516 Hydrangea macrophylla HOM05D020730 ORTHO05D009693 2.3e-06 55.5 93 39.8
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 2.3e-06 55.5 85 36.5
MBI17_g08331_MAGBIO Magnolia biondii HOM05D007825 ORTHO05D009693 3.0e-06 55.1 73 39.7
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 5.2e-06 54.3 87 37.9
Nn6g34873 Nelumbo nucifera HOM05D007825 ORTHO05D009693 6.8e-06 53.9 98 38.8


User provided reference genes

Program Settings