Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 4.5e-62 241.1 124 100.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.6e-54 215.3 124 87.1
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.9e-53 211.8 121 87.6
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.5e-51 204.9 122 81.1
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-49 199.9 120 81.7
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.5e-49 199.5 120 81.7
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.5e-49 199.5 121 79.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 4.3e-49 198.0 121 78.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 4.3e-49 198.0 120 80.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.7e-49 197.6 121 78.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 7.4e-49 197.2 120 80.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.3e-48 196.4 120 78.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 78.5
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 78.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.3e-48 196.4 120 79.2
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.6e-48 196.1 120 79.2
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.6e-48 196.1 121 78.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.2e-48 195.7 121 76.9
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.7e-48 194.9 121 76.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.7e-48 194.9 121 76.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 4.8e-48 194.5 120 78.3
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 4.8e-48 194.5 121 76.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 6.3e-48 194.1 120 78.3
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.4e-47 193.0 120 77.5
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.4e-47 193.0 119 78.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.4e-47 192.2 121 76.9
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.4e-47 192.2 119 78.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.1e-47 191.8 120 76.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 4.1e-47 191.4 121 74.4
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.3e-47 191.0 121 76.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 5.3e-47 191.0 120 75.0
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 5.3e-47 191.0 120 75.8
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 6.9e-47 190.7 121 76.0
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 9.0e-47 190.3 107 86.0
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 9.0e-47 190.3 120 74.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 9.0e-47 190.3 121 73.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.2e-46 189.9 119 78.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.2e-46 189.9 117 76.9
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.5e-46 189.5 119 75.6
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.0e-46 189.1 121 73.6
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.6e-46 188.7 119 73.9
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.4e-46 188.3 121 74.4
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.5e-46 188.0 121 71.9
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 5.9e-46 187.6 117 77.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 7.7e-46 187.2 121 72.7
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 7.7e-46 187.2 121 72.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.7e-46 187.2 118 76.3
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 7.7e-46 187.2 121 74.4
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.0e-45 186.8 121 74.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.0e-45 186.8 121 72.7
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.3e-45 186.4 117 76.9
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.3e-45 186.4 121 71.9
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.2e-45 185.7 121 71.9
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.2e-45 185.7 117 77.8
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.2e-45 185.7 121 71.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-45 185.7 121 71.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.8e-45 184.9 117 76.1
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 5.0e-45 184.5 120 72.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 6.5e-45 184.1 121 73.6
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.5e-45 183.7 119 73.1
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 8.5e-45 183.7 120 71.7
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.5e-45 183.7 121 71.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-44 183.3 121 71.1
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-44 183.3 121 71.1
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.1e-44 183.3 121 71.1
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.1e-44 183.3 117 76.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.1e-44 183.3 120 71.7
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-44 183.3 121 71.1
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-44 183.0 121 71.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.4e-44 183.0 121 71.1
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.2e-44 181.8 121 71.1
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 5.5e-44 181.0 121 71.1
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 5.5e-44 181.0 117 76.9
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 7.2e-44 180.6 116 73.3
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 7.2e-44 180.6 116 75.0
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.4e-44 180.3 121 71.1
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.2e-43 179.9 121 69.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.2e-43 179.9 110 81.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.6e-43 179.5 117 72.6
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.7e-43 178.7 121 71.1
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.7e-43 178.7 121 71.1
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.7e-43 178.7 119 70.6
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.6e-43 178.3 120 69.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-43 178.3 121 70.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.6e-43 178.3 119 72.3
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.4e-42 176.4 116 70.7
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.4e-42 176.4 116 70.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.4e-42 176.4 114 72.8
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.4e-42 176.4 121 68.6
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-42 176.0 120 70.0
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.8e-42 176.0 121 70.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.3e-42 175.6 105 81.9
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.5e-41 172.9 121 67.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.0e-41 172.6 108 75.9
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-41 171.8 121 67.8
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.3e-41 171.4 121 65.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.3e-41 171.4 121 65.3
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.4e-41 170.6 121 67.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.8e-40 168.7 121 69.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 8.2e-40 167.2 121 63.6
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.4e-39 166.4 116 66.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.4e-39 165.6 120 69.2
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 6.9e-39 164.1 119 68.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.5e-37 157.5 117 65.8
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.1e-36 156.8 120 62.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.4e-36 156.4 110 68.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.5e-36 155.6 115 67.0
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.2e-36 155.2 93 78.5
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.2e-36 154.1 98 78.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 9.4e-36 153.7 99 75.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.6e-35 152.9 115 66.1
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.1e-35 152.5 100 72.0
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.1e-35 152.5 96 78.1
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 2.7e-35 152.1 96 77.1
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.9e-35 150.6 121 62.0
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.0e-34 150.2 119 63.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-33 146.7 111 63.1
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.1e-33 146.7 95 75.8
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.3e-33 145.2 85 80.0
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 3.7e-32 141.7 118 61.0
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.8e-32 141.4 120 59.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-31 140.2 98 67.3
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.1e-31 140.2 98 67.3
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.3e-31 137.9 86 79.1
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 5.3e-31 137.9 118 60.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 4.5e-30 134.8 100 65.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.7e-30 134.0 96 66.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.3e-29 133.3 123 56.1
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.2e-29 132.5 120 57.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.9e-29 132.1 108 61.1
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.9e-29 132.1 116 54.3
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 2.5e-28 129.0 80 72.5
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 5.5e-28 127.9 120 49.2
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.7e-27 125.6 95 65.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.7e-27 125.6 112 53.6
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.6e-27 125.2 81 70.4
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.8e-26 122.9 88 61.4
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.3e-26 122.5 128 52.3
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.8e-26 120.6 118 53.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.1e-25 120.2 118 52.5
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.5e-25 119.8 121 52.9
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.0e-25 119.4 113 50.4
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.6e-25 119.0 133 51.1
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 2.6e-25 119.0 113 49.6
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.5e-25 117.5 118 51.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.7e-24 116.3 110 56.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.2e-24 115.9 121 51.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.8e-24 115.5 113 49.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 4.8e-24 114.8 85 64.7
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.2e-24 114.0 114 52.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.1e-23 110.5 102 52.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.6e-19 98.6 76 68.4
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 2.0e-17 92.8 61 70.5
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.4e-15 86.7 55 69.1
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 7.2e-12 74.3 77 53.2
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 4.9e-08 61.6 52 51.9
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 4.1e-07 58.5 111 34.2
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 7.0e-07 57.8 111 34.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 9.2e-07 57.4 111 31.5
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.2e-06 57.0 115 31.3
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 32.4
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.0e-06 56.2 111 32.4
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 2.7e-06 55.8 111 31.5
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.7e-06 55.8 34 73.5
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 32.4
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 32.4
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 32.4
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 5.9e-06 54.7 111 30.6
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 5.9e-06 54.7 111 30.6
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 5.9e-06 54.7 111 31.5
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 7.7e-06 54.3 111 32.4


User provided reference genes

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