Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090280 Amaranthus hybridus HOM05D002560 ORTHO05D003782 6.5e-140 500.7 256 100.0
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 7.0e-102 374.4 257 74.7
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 8.8e-97 357.5 257 73.9
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.3e-92 342.8 257 71.6
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.5e-91 338.2 257 70.0
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 8.3e-87 324.3 260 66.5
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.0e-81 305.8 260 63.1
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 8.9e-81 304.3 265 60.8
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 6.4e-79 298.1 260 61.9
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.4e-78 297.0 265 60.8
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 4.1e-78 295.4 262 59.9
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 4.1e-78 295.4 262 61.8
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.7e-77 292.7 262 61.1
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.7e-77 292.7 257 65.8
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 6.0e-77 291.6 262 60.3
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.7e-76 290.0 263 59.3
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 3.0e-76 289.3 257 63.8
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 3.9e-76 288.9 264 57.6
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.6e-74 283.5 262 58.8
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.6e-74 283.5 263 58.6
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 2.1e-74 283.1 264 58.0
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.8e-74 282.7 262 58.8
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 3.6e-74 282.3 261 58.6
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 3.6e-74 282.3 266 57.1
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 3.6e-74 282.3 264 57.6
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 6.2e-74 281.6 260 58.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 8.0e-74 281.2 262 58.4
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.0e-74 281.2 262 58.8
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 4.0e-73 278.9 264 57.6
MELO3C027407.2 Cucumis melo HOM05D002560 ORTHO05D003782 5.2e-73 278.5 264 56.8
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 5.2e-73 278.5 262 58.0
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 5.2e-73 278.5 262 58.0
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 6.8e-73 278.1 262 58.0
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.5e-72 276.9 264 56.1
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 2.0e-72 276.6 262 59.9
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 5.8e-72 275.0 262 58.8
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 9.8e-72 274.2 263 57.4
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 9.8e-72 274.2 264 55.7
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.3e-71 273.9 262 57.3
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 1.7e-71 273.5 264 55.7
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.7e-71 273.5 264 58.3
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 2.2e-71 273.1 259 56.8
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 2.2e-71 273.1 262 56.5
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.9e-71 272.7 263 57.4
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.7e-71 272.3 265 57.4
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.9e-70 270.0 263 56.7
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 4.1e-70 268.9 264 56.8
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 4.1e-70 268.9 263 56.7
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 5.4e-70 268.5 259 57.1
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 1.6e-69 266.9 262 57.6
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.6e-69 266.9 264 56.1
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.6e-69 266.9 262 55.3
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.6e-69 266.9 264 55.7
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 3.5e-69 265.8 261 56.7
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.5e-69 265.8 265 57.4
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 4.6e-69 265.4 262 55.3
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 7.8e-69 264.6 264 55.7
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.0e-68 264.2 261 57.9
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 1.0e-68 264.2 259 55.2
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 2.3e-68 263.1 266 58.3
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 3.9e-68 262.3 265 55.8
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 3.9e-68 262.3 260 55.0
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.6e-68 261.5 259 58.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.5e-67 260.4 266 56.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 1.5e-67 260.4 262 53.8
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.9e-67 260.0 260 57.3
Actinidia32554 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.9e-67 260.0 266 56.0
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.9e-67 260.0 266 56.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 4.3e-67 258.8 259 55.6
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 4.3e-67 258.8 262 56.1
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 5.6e-67 258.5 264 54.5
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 5.6e-67 258.5 262 53.4
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 5.6e-67 258.5 268 53.0
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 9.5e-67 257.7 262 53.4
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.6e-66 256.9 259 54.1
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.6e-66 256.9 261 53.6
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 2.1e-66 256.5 257 54.9
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 4.7e-66 255.4 261 55.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.7e-66 255.4 260 54.2
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 4.7e-66 255.4 266 56.4
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 6.2e-66 255.0 260 54.2
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 8.1e-66 254.6 260 55.0
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.1e-65 254.2 264 56.4
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.1e-65 254.2 263 54.4
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.1e-65 254.2 263 54.4
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.4e-65 253.8 259 53.7
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 3.1e-65 252.7 262 52.3
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.0e-65 252.3 262 55.3
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 5.2e-65 251.9 262 53.8
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 5.2e-65 251.9 262 53.8
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 5.2e-65 251.9 262 53.8
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 6.8e-65 251.5 261 52.1
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.5e-64 250.4 259 54.1
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 2.0e-64 250.0 261 55.2
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 2.0e-64 250.0 261 53.3
CAN.G133.1 Capsicum annuum HOM05D002560 ORTHO05D003782 3.4e-64 249.2 259 53.7
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 4.4e-64 248.8 261 54.0
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.4e-64 248.8 262 55.0
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 4.4e-64 248.8 262 52.7
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 5.8e-64 248.4 261 52.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 7.5e-64 248.1 262 53.1
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 1.7e-63 246.9 262 53.4
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 3.7e-63 245.7 262 52.7
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 3.7e-63 245.7 261 54.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 3.7e-63 245.7 263 54.0
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 6.4e-63 245.0 258 54.7
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.2e-61 240.7 263 51.7
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 2.1e-61 240.0 260 53.8
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 4.6e-61 238.8 268 51.5
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.3e-60 236.5 264 52.7
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.0e-60 236.1 302 46.4
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 8.6e-60 234.6 303 46.5
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 8.6e-60 234.6 303 46.5
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.5e-59 233.8 257 52.5
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 3.3e-59 232.6 257 53.3
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.6e-58 230.3 303 45.9
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 1.1e-57 227.6 265 48.3
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 1.8e-57 226.9 265 50.9
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.4e-57 226.5 257 50.6
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 5.2e-57 225.3 302 45.7
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 6.8e-57 224.9 261 50.2
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 6.8e-57 224.9 261 50.2
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 2.6e-56 223.0 256 51.2
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.4e-56 222.6 258 49.6
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 3.4e-56 222.6 265 50.6
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.7e-55 220.3 256 50.8
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.7e-55 220.3 256 50.8
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 2.9e-55 219.5 256 50.4
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 3.8e-55 219.2 256 50.8
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 4.9e-55 218.8 265 50.2
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 4.9e-55 218.8 257 49.8
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.4e-54 216.5 257 50.6
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 2.4e-54 216.5 257 49.0
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 3.2e-54 216.1 260 47.3
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 4.6e-53 212.2 256 49.2
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 1.7e-52 210.3 238 49.6
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 2.3e-52 209.9 256 48.8
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 2.3e-52 209.9 256 48.8
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 3.9e-52 209.1 256 47.3
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 3.9e-52 209.1 256 48.8
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 3.9e-52 209.1 256 48.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 6.6e-52 208.4 256 48.8
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 8.7e-52 208.0 256 48.4
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.1e-51 207.6 257 48.6
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 9.6e-51 204.5 258 47.7
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.2e-50 204.1 268 48.9
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 2.8e-50 203.0 264 47.7
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 4.7e-50 202.2 257 48.6
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 5.3e-49 198.7 258 45.7
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.2e-48 197.6 257 47.1
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 2.6e-48 196.4 262 45.8
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 5.8e-48 195.3 258 45.3
Sopen10g027940 Solanum pennellii HOM05D002560 ORTHO05D003782 8.4e-47 191.4 259 46.7
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 2.4e-46 189.9 180 59.4
Solyc10g076270.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.4e-46 189.9 259 46.3
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 3.3e-43 179.5 264 45.5
Haze_01994 Corylus avellana HOM05D002560 ORTHO05D003782 7.3e-43 178.3 186 54.8
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 2.4e-41 173.3 264 44.7
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 6.9e-41 171.8 257 42.8
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 6.9e-41 171.8 257 42.8
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 9.0e-41 171.4 257 42.8
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.2e-40 171.0 257 42.8
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.3e-35 152.9 270 39.6
Cfa012921 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.2e-32 144.4 125 59.2
Haze_01984 Corylus avellana HOM05D002560 ORTHO05D003782 1.5e-27 127.5 134 50.7
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 8.2e-26 121.7 270 33.7
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.9e-22 110.5 257 35.0
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.9e-22 110.5 265 36.6
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.5e-22 109.0 261 35.6
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.7e-21 106.7 252 34.5
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 1.0e-20 104.8 273 32.6
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 6.3e-18 95.5 230 33.0
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 4.1e-17 92.8 236 30.9
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.0e-12 78.2 65 61.5
VMungo0647G0295 Vigna mungo HOM05D002560 ORTHO05D022477 1.4e-12 77.8 127 37.8
MELO3C033009.2 Cucumis melo HOM05D002560 ORTHO05D022477 5.1e-12 75.9 87 51.7
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 3.3e-11 73.2 60 63.3
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.5e-08 64.3 56 57.1
MBI17_g18133_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 3.4e-08 63.2 60 55.0
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 5.0e-07 59.3 245 26.1
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.4e-06 57.8 42 64.3
VMungo0647G0655 Vigna mungo HOM05D002560 ORTHO05D022477 9.4e-06 55.1 59 44.1


User provided reference genes

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