Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.6e-182 642.9 383 100.0
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.4e-85 320.9 418 58.1
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 6.8e-85 318.5 420 49.8
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.0e-69 266.2 394 45.2
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.2e-62 244.6 389 42.4
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 7.1e-50 202.2 393 38.2
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 6.0e-49 199.1 375 47.5
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 8.7e-48 195.3 393 39.7
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 7.6e-44 182.2 384 35.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.4e-42 177.9 221 46.6
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.2e-42 176.8 221 48.9
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.3e-40 170.6 395 38.2
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.0e-40 170.2 395 38.0
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.1e-40 169.5 406 41.9
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 5.6e-39 166.0 397 44.3
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.7e-38 163.3 396 37.4
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.4e-37 161.4 225 46.7
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.4e-37 160.6 223 44.4
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.1e-37 160.2 215 46.5
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 4.0e-37 159.8 225 42.7
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 4.0e-37 159.8 225 45.8
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.9e-37 159.1 225 46.7
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.9e-37 159.1 225 46.7
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.9e-37 159.1 225 46.7
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 6.9e-37 159.1 215 46.5
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 9.0e-37 158.7 222 45.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.2e-36 158.3 225 47.1
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.5e-36 156.4 388 34.3
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.0e-35 155.2 227 41.9
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.0e-35 155.2 219 45.7
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.8e-35 153.3 222 46.4
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.5e-35 152.5 217 44.7
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.1e-34 151.8 219 43.4
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 2.5e-34 150.6 232 44.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.5e-34 150.6 391 33.5
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 4.2e-34 149.8 229 40.6
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.2e-34 149.8 218 43.1
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 5.5e-34 149.4 184 47.3
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.1e-34 149.1 219 42.9
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 9.3e-34 148.7 414 39.4
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.1e-33 147.5 415 35.2
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.1e-33 147.5 400 33.0
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.5e-33 146.7 403 35.7
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 4.6e-33 146.4 417 33.3
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 4.6e-33 146.4 230 40.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 4.6e-33 146.4 220 40.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.6e-33 146.4 207 44.0
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.0e-32 143.7 197 46.7
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 5.1e-32 142.9 193 46.6
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.1e-32 142.9 178 48.3
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.7e-32 142.5 373 32.2
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 8.7e-32 142.1 209 44.0
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.9e-31 141.0 384 38.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.9e-31 141.0 209 43.1
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.3e-31 139.8 403 38.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 4.3e-31 139.8 212 42.9
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.3e-30 138.3 402 32.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.6e-30 137.9 217 39.6
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.6e-30 137.9 418 41.1
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 3.7e-30 136.7 226 41.6
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.7e-30 136.7 229 39.3
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 6.3e-30 136.0 224 42.4
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.1e-29 135.2 221 41.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.8e-29 134.4 217 41.0
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.8e-29 134.4 418 36.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.4e-29 134.0 188 43.6
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.2e-28 131.7 221 42.1
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.2e-28 131.7 209 41.1
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.5e-28 131.3 196 42.9
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.5e-28 131.3 216 41.2
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.0e-28 131.0 223 38.6
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 5.9e-28 129.4 232 41.4
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 5.9e-28 129.4 209 41.1
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.3e-27 128.3 377 31.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.7e-27 127.9 140 53.6
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.9e-27 127.1 213 37.6
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 5.0e-27 126.3 224 40.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 5.0e-27 126.3 232 37.9
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 6.5e-27 125.9 223 39.9
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 6.5e-27 125.9 396 31.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.4e-26 124.8 216 42.1
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.4e-26 124.8 399 31.3
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.4e-26 124.8 223 39.9
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.2e-26 123.2 221 39.4
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 5.5e-26 122.9 393 31.3
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 9.3e-26 122.1 182 41.8
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 9.3e-26 122.1 452 28.8
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.6e-25 121.3 142 50.7
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.6e-25 120.2 197 40.6
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 3.6e-25 120.2 145 47.6
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.6e-25 119.8 204 38.2
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 6.1e-25 119.4 199 41.2
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 7.9e-25 119.0 396 31.1
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.0e-24 118.6 216 37.0
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.8e-24 117.9 217 36.9
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 8.7e-24 115.5 232 37.9
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.1e-23 115.2 220 38.6
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.9e-23 114.4 229 33.6
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.9e-23 114.4 398 35.7
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 2.5e-23 114.0 218 34.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 7.4e-23 112.5 224 35.3
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 9.7e-23 112.1 352 31.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 9.7e-23 112.1 206 37.9
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.3e-22 111.7 219 40.2
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.3e-22 111.7 388 29.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.6e-22 111.3 165 38.2
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.2e-22 110.9 399 30.3
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 3.7e-22 110.2 183 37.2
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 3.7e-22 110.2 228 35.5
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 4.8e-22 109.8 223 36.8
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 4.8e-22 109.8 217 36.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 8.2e-22 109.0 228 30.7
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.4e-21 107.5 206 36.9
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 6.9e-21 105.9 247 32.8
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 6.9e-21 105.9 113 52.2
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.9e-21 105.9 205 36.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 9.1e-21 105.5 221 32.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 2.0e-20 104.4 222 35.1
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 4.5e-20 103.2 229 35.4
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 5.9e-20 102.8 391 32.5
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.0e-19 102.1 181 33.1
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.3e-19 101.7 226 35.4
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.7e-19 101.3 195 36.9
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 6.5e-19 99.4 418 37.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 6.5e-19 99.4 199 36.2
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 8.5e-19 99.0 209 35.4
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.4e-18 98.2 200 35.0
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 5.5e-18 96.3 177 37.9
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.6e-17 94.7 193 35.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 2.7e-17 94.0 115 48.7
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 4.6e-17 93.2 245 32.2
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 7.9e-17 92.4 389 24.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 8.8e-16 89.0 99 49.5
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.5e-15 88.2 198 31.8
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.5e-15 88.2 198 31.8
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.0e-15 87.8 193 30.6
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.6e-15 87.4 230 32.2
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.4e-15 86.7 198 32.3
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.4e-15 86.7 220 32.3
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 9.7e-15 85.5 206 33.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 4.8e-14 83.2 227 29.5
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 6.3e-14 82.8 222 27.9
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 6.3e-14 82.8 220 30.9
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.1e-13 82.0 209 31.6
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.8e-13 81.3 218 28.4
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 5.3e-13 79.7 112 43.8
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 9.1e-13 79.0 223 31.4
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.5e-12 78.2 222 31.5
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 2.6e-12 77.4 156 41.0
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 3.4e-12 77.0 231 31.6
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 4.5e-12 76.6 222 30.2
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 1.0e-11 75.5 224 27.2
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.0e-11 75.5 235 28.1
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 3.8e-11 73.6 234 30.8
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 5.0e-11 73.2 225 31.6
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 8.5e-11 72.4 83 50.6
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.1e-10 72.0 385 27.3
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 4.2e-10 70.1 228 30.3
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.2e-09 68.6 247 26.7
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.6e-09 67.0 224 29.5
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 3.6e-09 67.0 226 30.5
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 6.1e-09 66.2 230 29.6
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 2.3e-08 64.3 246 28.9
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 2.3e-08 64.3 232 29.7
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 5.2e-08 63.2 230 27.8
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 8.8e-08 62.4 223 30.0
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.1e-07 62.0 220 27.7


User provided reference genes

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