Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.2e-230 802.7 394 100.0
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 8.3e-179 630.6 406 76.6
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 4.6e-161 571.6 393 70.0
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.4e-154 550.1 390 69.0
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.9e-154 549.7 397 66.2
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 4.2e-154 548.5 421 62.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 7.1e-154 547.7 418 65.1
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.9e-151 539.7 413 64.6
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.5e-151 539.3 415 63.9
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.3e-151 538.9 427 61.6
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 9.6e-151 537.3 413 63.0
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.3e-150 537.0 414 64.0
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.6e-150 536.6 352 72.7
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 2.1e-150 536.2 407 64.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 2.8e-150 535.8 406 64.8
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 3.6e-150 535.4 389 67.1
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.8e-150 535.0 406 65.5
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 4.8e-150 535.0 405 65.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.4e-149 532.7 405 65.4
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.1e-149 532.3 397 65.5
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 4.0e-149 531.9 421 63.4
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 5.3e-149 531.6 400 65.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 9.0e-149 530.8 431 60.6
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.2e-148 530.4 399 64.7
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 3.4e-148 528.9 431 60.3
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 4.5e-148 528.5 419 61.6
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 5.8e-148 528.1 406 64.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 9.9e-148 527.3 424 62.7
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 3.8e-147 525.4 376 66.2
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.1e-146 523.9 374 65.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.4e-146 523.5 391 63.9
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.9e-146 523.1 423 60.5
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 3.2e-146 522.3 425 60.7
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.2e-146 522.3 361 69.3
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 7.1e-146 521.2 404 63.9
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 9.3e-146 520.8 422 60.2
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 1.2e-145 520.4 393 63.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.6e-145 520.0 407 63.6
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.7e-145 519.2 387 65.1
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 3.5e-145 518.8 421 61.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.6e-145 518.5 451 59.6
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 4.6e-145 518.5 412 63.1
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 6.0e-145 518.1 412 61.7
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 1.0e-144 517.3 369 68.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.0e-144 517.3 412 61.7
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.8e-144 516.5 413 61.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.8e-144 516.5 385 64.9
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.3e-144 516.2 435 64.8
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.3e-144 516.2 381 64.8
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 3.0e-144 515.8 396 63.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.0e-144 515.8 385 63.9
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.9e-144 515.4 414 61.6
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 6.7e-144 514.6 417 61.4
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 6.7e-144 514.6 412 61.4
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.1e-143 513.8 424 59.9
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.5e-143 513.5 353 69.4
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.5e-143 513.5 432 59.7
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.9e-143 513.1 386 65.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.5e-143 512.7 355 69.3
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 3.3e-143 512.3 409 61.6
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 4.3e-143 511.9 398 63.3
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.3e-142 510.4 402 63.4
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.3e-142 510.4 426 60.6
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.6e-142 510.0 412 61.2
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.8e-142 509.2 416 62.3
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.8e-141 506.5 361 69.3
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 2.4e-141 506.1 418 61.0
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 3.1e-141 505.8 409 61.4
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.1e-141 505.8 410 61.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 6.9e-141 504.6 432 60.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.2e-140 503.8 360 67.2
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-140 503.8 365 68.2
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.0e-140 503.1 360 67.2
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.6e-140 502.7 364 67.6
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 4.5e-140 501.9 386 64.5
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 4.5e-140 501.9 386 64.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 7.6e-140 501.1 394 63.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.3e-139 500.4 422 59.5
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 2.9e-139 499.2 361 67.6
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 2.4e-138 496.1 399 60.2
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.5e-138 495.0 437 57.0
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.3e-136 489.6 368 68.8
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 3.3e-135 485.7 406 60.6
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-134 483.8 405 59.0
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 2.1e-134 483.0 412 58.5
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 4.2e-130 468.8 370 61.1
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 4.2e-130 468.8 415 59.3
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.8e-128 463.4 382 60.5
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 3.9e-128 462.2 364 60.2
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.5e-124 450.3 432 52.3
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.3e-120 436.4 346 62.7
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 1.1e-117 427.6 323 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 3.1e-117 426.0 362 58.0
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 6.9e-117 424.9 292 68.8
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 7.7e-116 421.4 301 66.8
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 1.0e-112 411.0 299 67.6
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.1e-112 408.7 368 55.2
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.5e-106 388.7 340 58.2
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.0e-103 380.2 324 59.9
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.1e-101 374.4 412 50.7
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 4.5e-100 369.0 377 49.3
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.5e-98 363.2 378 48.7
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.0e-88 331.3 245 66.1
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.3e-86 324.3 249 62.7
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.8e-79 298.1 170 78.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.8e-79 298.1 170 78.8
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.1e-77 292.7 179 75.4
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 7.0e-77 292.0 258 56.2
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 2.3e-75 287.0 392 42.3
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.0e-75 285.8 296 51.7
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 7.0e-69 265.4 328 43.9
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.3e-66 256.5 205 61.5
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 7.8e-52 208.8 127 81.1
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.0e-51 208.4 481 34.1
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 2.2e-46 190.7 217 49.3
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-44 184.9 102 79.4
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.6e-41 174.5 128 63.3
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 3.6e-41 173.3 302 36.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.6e-39 167.2 115 67.8
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.2e-37 160.2 93 80.6
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.0e-31 141.0 84 73.8
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.8e-31 139.4 141 51.8
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 3.7e-25 120.2 80 65.0
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.0e-19 102.1 201 36.3
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.9e-19 100.1 155 41.9
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 9.6e-18 95.5 100 51.0
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.6e-15 87.4 120 42.5
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 5.5e-13 79.7 114 39.5
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 5.0e-06 56.6 170 28.2
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 6.5e-06 56.2 195 21.5


User provided reference genes

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