Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.2e-138 496.5 258 100.0
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.3e-35 152.5 174 48.9
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 9.1e-33 144.8 124 59.7
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 6.5e-23 112.1 199 36.7
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.5e-22 110.2 195 34.9
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 9.4e-22 108.2 199 35.7
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 6.1e-21 105.5 194 34.5
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 8.8e-20 101.7 195 31.8
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 2.0e-19 100.5 186 32.3
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 2.6e-19 100.1 195 33.3
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 4.4e-19 99.4 193 33.2
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 7.5e-19 98.6 193 32.1
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.3e-18 97.8 170 35.3
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 1.7e-18 97.4 186 32.8
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 1.7e-18 97.4 196 31.1
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 2.2e-18 97.1 191 32.5
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 2.2e-18 97.1 196 32.1
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.8e-18 96.7 193 32.6
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 3.7e-18 96.3 195 31.3
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 4.8e-18 95.9 195 31.3
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 4.8e-18 95.9 195 31.3
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.3e-18 95.5 117 44.4
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 6.3e-18 95.5 193 32.1
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 6.3e-18 95.5 193 32.1
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 6.3e-18 95.5 194 32.0
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 6.3e-18 95.5 194 33.0
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 8.2e-18 95.1 195 30.8
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 8.2e-18 95.1 193 32.1
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 8.2e-18 95.1 195 31.8
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 8.2e-18 95.1 201 31.3
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.1e-17 94.7 215 31.2
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 1.8e-17 94.0 195 30.8
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 1.8e-17 94.0 195 32.8
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 1.8e-17 94.0 190 33.2
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 2.4e-17 93.6 193 29.5
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 2.4e-17 93.6 195 31.8
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 3.1e-17 93.2 201 31.3
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 3.1e-17 93.2 195 32.3
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 3.1e-17 93.2 184 32.1
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 3.1e-17 93.2 195 31.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 4.1e-17 92.8 195 31.8
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 4.1e-17 92.8 275 27.3
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 4.1e-17 92.8 195 31.8
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 4.1e-17 92.8 200 30.0
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 5.3e-17 92.4 195 30.8
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 5.3e-17 92.4 195 30.8
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 5.3e-17 92.4 180 31.7
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 5.3e-17 92.4 187 30.5
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 5.3e-17 92.4 194 32.0
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 7.0e-17 92.0 195 30.8
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 9.1e-17 91.7 195 31.3
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.2e-16 91.3 193 30.6
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 1.6e-16 90.9 194 30.4
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 1.6e-16 90.9 183 32.2
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.0e-16 90.5 276 26.8
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 2.0e-16 90.5 196 29.6
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 2.7e-16 90.1 195 30.8
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 2.7e-16 90.1 195 30.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 3.5e-16 89.7 192 30.7
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 3.5e-16 89.7 180 31.1
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 3.5e-16 89.7 185 30.8
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 4.5e-16 89.4 198 29.3
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 5.9e-16 89.0 191 31.9
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 7.7e-16 88.6 193 29.5
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 7.7e-16 88.6 190 30.0
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 7.7e-16 88.6 180 31.1
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 1.0e-15 88.2 195 29.2
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.0e-15 88.2 195 29.2
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.0e-15 88.2 193 29.5
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.3e-15 87.8 192 30.7
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.3e-15 87.8 192 30.7
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 1.3e-15 87.8 193 29.0
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.7e-15 87.4 195 30.3
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.7e-15 87.4 193 29.5
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.7e-15 87.4 145 34.5
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 2.2e-15 87.0 193 29.5
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 2.9e-15 86.7 285 25.6
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 2.9e-15 86.7 186 29.0
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 2.9e-15 86.7 193 29.0
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 8.5e-15 85.1 185 30.8
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 1.5e-14 84.3 194 30.4
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.5e-14 84.3 185 29.2
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.9e-14 84.0 192 27.6
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 2.5e-14 83.6 199 28.6
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 4.2e-14 82.8 132 38.6
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 4.2e-14 82.8 195 29.2
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 4.2e-14 82.8 200 29.5
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 5.5e-14 82.4 178 30.3
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 5.5e-14 82.4 165 34.5
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 5.5e-14 82.4 189 28.6
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 9.4e-14 81.6 191 29.3
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 1.2e-13 81.3 187 28.3
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 1.2e-13 81.3 94 41.5
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 2.1e-13 80.5 180 30.6
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 2.1e-13 80.5 195 27.7
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 2.7e-13 80.1 93 40.9
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 3.6e-13 79.7 195 27.2
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 3.6e-13 79.7 164 34.1
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 6.1e-13 79.0 94 40.4
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 6.1e-13 79.0 164 30.5
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 6.1e-13 79.0 164 30.5
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.8e-12 77.4 195 29.7
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 2.3e-12 77.0 181 29.3
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 3.0e-12 76.6 200 29.0
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 4.0e-12 76.3 200 28.0
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 4.0e-12 76.3 121 38.0
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 5.2e-12 75.9 184 31.5
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 8.8e-12 75.1 200 28.0
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 1.2e-11 74.7 181 31.5
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 1.2e-11 74.7 94 38.3
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 3.4e-11 73.2 161 33.5
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 7.5e-11 72.0 195 27.7
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 2.2e-10 70.5 94 36.2
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.4e-09 67.8 176 29.0
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.8e-09 67.4 199 26.1
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.8e-09 67.4 94 34.0
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 1.2e-08 64.7 164 26.8
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 4.5e-08 62.8 168 25.6
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 3.8e-07 59.7 76 38.2
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 6.5e-07 58.9 147 32.0
Pp3c15_15290 Physcomitrium patens HOM05D005281 ORTHO05D006351 8.5e-07 58.5 151 29.8
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 8.5e-07 58.5 155 29.0
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 1.1e-06 58.2 158 25.9
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.1e-06 58.2 157 29.3
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.1e-06 58.2 161 27.3
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.5e-06 57.8 157 33.1
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.5e-06 57.8 76 38.2
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 1.9e-06 57.4 161 27.3
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 3.2e-06 56.6 156 27.6
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 4.2e-06 56.2 96 32.3
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 4.2e-06 56.2 157 29.3
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 5.5e-06 55.8 166 30.7
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 7.2e-06 55.5 166 30.7
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 7.2e-06 55.5 166 30.7
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 7.2e-06 55.5 161 26.1
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 7.2e-06 55.5 161 26.1


User provided reference genes

Program Settings