Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g088400 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.0e-191 673.3 353 100.0
Ah.02g119980 Amaranthus hybridus HOM05D002461 ORTHO05D008675 4.9e-130 468.4 314 82.2
Ah.13g067560 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.1e-64 250.4 140 93.6
Ah.14g078590 Amaranthus hybridus HOM05D000029 ORTHO05D008675 9.7e-62 241.5 138 88.4
Ah.13g073740 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.3e-58 231.1 529 39.5
Ah.02g117860 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.0e-50 202.6 108 93.5
EL10Ac7g16155 Beta vulgaris HOM05D000029 ORTHO05D008675 6.5e-50 202.2 131 75.6
Ah.05g175000 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.5e-49 199.1 107 91.6
Ah.10g030780 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.2e-49 198.7 110 90.9
Ah.07g198020 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.5e-49 198.4 105 94.3
AUR62042025 Chenopodium quinoa HOM05D000029 ORTHO05D008675 9.5e-49 198.4 131 75.6
Ah.11g044780 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.6e-48 197.6 108 93.5
Ah.14g080250 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.1e-48 197.2 147 73.5
AUR62011270 Chenopodium quinoa HOM05D000029 ORTHO05D008675 3.6e-48 196.4 131 74.8
Ah.02g119150 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.8e-47 194.1 108 90.7
Ah.05g176570 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.8e-47 194.1 108 89.8
Hund21613 Selenicereus undatus HOM05D000029 ORTHO05D008675 4.1e-44 183.0 131 70.2
Ah.02g123850 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.2e-44 181.8 585 33.0
Ah.14g080610 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.2e-43 181.4 628 31.8
Sc14g0000050 Simmondsia chinensis HOM05D000029 ORTHO05D008675 2.3e-42 177.2 137 63.5
Ah.14g079300 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.6e-42 175.6 89 98.9
Ah.14g080440 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.3e-41 172.9 649 31.0
Ah.07g196560 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.1e-40 170.6 660 30.6
Ah.02g117950 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.0e-35 152.5 135 67.4
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 1.7e-34 151.0 99 80.8
Ah.11g042210 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.3e-34 150.6 107 70.1
Ah.05g174440 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.1e-33 148.3 107 69.2
Ah.05g172940 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.5e-33 147.9 107 69.2
Ah.16g107710 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.5e-33 147.1 107 69.2
MD15G1157800 Malus domestica HOM05D000029 ORTHO05D008675 2.5e-33 147.1 142 53.5
Ah.02g117970 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.3e-33 146.7 93 75.3
FAN23G2015 Fragaria x ananassa HOM05D000015 ORTHO05D008675 3.3e-33 146.7 143 55.2
FvH4_1g01520 Fragaria vesca HOM05D000029 ORTHO05D008675 5.6e-33 146.0 143 55.2
Prupe.7G253000 Prunus persica HOM05D000029 ORTHO05D008675 9.5e-33 145.2 142 52.8
Ah.16g110300 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.8e-32 143.7 137 58.4
FAN28G2859 Fragaria x ananassa HOM05D000029 ORTHO05D008675 4.7e-32 142.9 143 54.5
COL.COLO4_18730 Corchorus olitorius HOM05D000029 ORTHO05D008675 1.1e-31 141.7 142 53.5
FAN26G0282 Fragaria x ananassa HOM05D000029 ORTHO05D008675 2.3e-31 140.6 143 53.1
Dinv42902 Davidia involucrata HOM05D000029 ORTHO05D008675 4.0e-31 139.8 147 48.3
Dinv43199 Davidia involucrata HOM05D000029 ORTHO05D008675 4.0e-31 139.8 147 48.3
MD02G1012000 Malus domestica HOM05D000029 ORTHO05D008675 2.0e-30 137.5 142 50.0
RcHm_v2.0_Chr2g0086441 Rosa chinensis HOM05D000029 ORTHO05D008675 2.0e-30 137.5 143 52.4
Eucgr.C00408 Eucalyptus grandis HOM05D000029 ORTHO05D008675 7.5e-30 135.6 142 52.1
Ah.01g012310 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.8e-30 135.2 108 69.4
Manes.06G040500 Manihot esculenta HOM05D000029 ORTHO05D008675 1.3e-29 134.8 133 51.9
CANSAT11G0207 Cannabis sativa HOM05D000029 ORTHO05D008675 2.9e-29 133.7 135 50.4
Cfa020871 Carpinus fangiana HOM05D000029 ORTHO05D008675 4.9e-29 132.9 142 51.4
PGR142G0310 Punica granatum HOM05D000029 ORTHO05D008675 6.4e-29 132.5 140 47.9
Atru.chr7.195 Acer truncatum HOM05D000029 ORTHO05D008675 1.1e-28 131.7 143 48.3
Haze_19300 Corylus avellana HOM05D000029 ORTHO05D008675 1.1e-28 131.7 142 50.7
CiPaw.16G116800 Carya illinoinensis HOM05D000029 ORTHO05D008675 1.4e-28 131.3 142 49.3
Potri.006G189000 Populus trichocarpa HOM05D000029 ORTHO05D008675 1.9e-28 131.0 136 52.2
Duzib187G1722 Durio zibethinus HOM05D000029 ORTHO05D008675 3.2e-28 130.2 142 48.6
CSS0004124 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D008675 4.1e-28 129.8 142 51.4
Ciclev10007366m.g Citrus clementina HOM05D000029 ORTHO05D008675 5.4e-28 129.4 145 50.3
Oeu040772.2 Olea europaea HOM05D000029 ORTHO05D008675 5.4e-28 129.4 140 47.9
TAR636G1414 Trochodendron aralioides HOM05D000029 ORTHO05D008675 5.4e-28 129.4 147 49.0
Thecc.09G037100 Theobroma cacao HOM05D000029 ORTHO05D008675 7.0e-28 129.0 142 51.4
Hma1.2p1_0182F.1_g080640 Hydrangea macrophylla HOM05D000029 ORTHO05D008675 1.2e-27 128.3 140 50.0
Oeu028786.1 Olea europaea HOM05D000029 ORTHO05D008675 1.6e-27 127.9 139 47.5
Potri.018G113000 Populus trichocarpa HOM05D000029 ORTHO05D008675 2.0e-27 127.5 136 50.7
Duzib168G1584 Durio zibethinus HOM05D000029 ORTHO05D008675 2.7e-27 127.1 142 47.9
TAR625G0961 Trochodendron aralioides HOM05D000029 ORTHO05D008675 6.0e-27 125.9 149 47.7
CsaV3_2G003490 Cucumis sativus L. HOM05D000029 ORTHO05D008675 7.8e-27 125.6 142 44.4
MELO3C004449.2 Cucumis melo HOM05D000029 ORTHO05D008675 1.0e-26 125.2 142 44.4
Gohir.A05G049700 Gossypium hirsutum HOM05D000029 ORTHO05D008675 1.0e-26 125.2 142 49.3
Gohir.D05G051500 Gossypium hirsutum HOM05D000029 ORTHO05D008675 1.0e-26 125.2 142 49.3
Gorai.009G053200 Gossypium raimondii HOM05D000029 ORTHO05D008675 1.0e-26 125.2 142 49.3
Sed0018893 Sechium edule HOM05D000029 ORTHO05D008675 1.0e-26 125.2 142 45.8
Cpa.g.sc46.97 Carica papaya HOM05D000029 ORTHO05D008675 1.7e-26 124.4 145 44.8
TWI63G0625 Tripterygium wilfordii HOM05D000029 ORTHO05D008675 1.7e-26 124.4 142 47.9
Actinidia04258 Actinidia chinensis HOM05D000029 ORTHO05D008675 8.6e-26 122.1 150 43.3
Lj9C710G7 Lonicera japonica HOM05D000029 ORTHO05D008675 8.6e-26 122.1 143 48.3
CiPaw.15G179100 Carya illinoinensis HOM05D000029 ORTHO05D008675 1.1e-25 121.7 140 47.9
Gorai.010G110800 Gossypium raimondii HOM05D000029 ORTHO05D008675 1.1e-25 121.7 138 49.3
QL02p091613 Quercus lobata HOM05D000029 ORTHO05D008675 1.5e-25 121.3 130 49.2
QL02p091668 Quercus lobata HOM05D000029 ORTHO05D008675 1.5e-25 121.3 130 49.2
ClCG11G003620 Citrullus lanatus HOM05D000361 ORTHO05D008498 2.5e-25 120.6 142 43.0
DCAR_019354 Daucus carota HOM05D000029 ORTHO05D008675 2.5e-25 120.6 137 47.4
Nn8g39752 Nelumbo nucifera HOM05D000029 ORTHO05D008675 4.3e-25 119.8 140 47.1
Ah.14g078970 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.6e-25 119.4 67 89.6
Gohir.D06G096100 Gossypium hirsutum HOM05D000029 ORTHO05D008675 5.6e-25 119.4 138 48.6
Aqoxy7G03509 Aquilegia oxysepala HOM05D000029 ORTHO05D008675 7.3e-25 119.0 141 46.1
Sabra06G0144500 Salix brachista HOM05D000029 ORTHO05D008675 1.2e-24 118.2 136 47.8
arahy.Tifrunner.gnm1.ann1.J2TUGE Arachis hypogaea HOM05D000029 ORTHO05D008675 1.6e-24 117.9 146 45.9
MBI15_g29771_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D008675 1.6e-24 117.9 146 41.8
Peaxi162Scf00347g00318 Petunia axillaris HOM05D000029 ORTHO05D008675 1.6e-24 117.9 147 48.3
Actinidia38351 Actinidia chinensis HOM05D000029 ORTHO05D008675 2.1e-24 117.5 140 43.6
Cc06_g07330 Coffea canephora HOM05D000029 ORTHO05D008675 2.8e-24 117.1 138 46.4
arahy.Tifrunner.gnm1.ann1.E0PJ22 Arachis hypogaea HOM05D000029 ORTHO05D008675 3.6e-24 116.7 146 46.6
Rhsim01G0049200 Rhododendron simsii HOM05D000029 ORTHO05D008675 3.6e-24 116.7 134 50.7
Nitab4.5_0000416g0050 Nicotiana tabacum HOM05D000029 ORTHO05D008675 4.7e-24 116.3 148 48.6
CAN.G520.39 Capsicum annuum HOM05D000029 ORTHO05D008675 1.1e-23 115.2 146 47.3
SGA_v2.0_scaffold183G39854 Striga asiatica HOM05D000029 ORTHO05D008675 1.4e-23 114.8 133 44.4
vmacro21877 Vaccinium macrocarpon HOM05D000029 ORTHO05D008675 3.1e-23 113.6 145 46.9
MSTRG.26310 Avicennia marina HOM05D000029 ORTHO05D008675 6.8e-23 112.5 137 46.0
Ah.10g033340 Amaranthus hybridus HOM05D002461 ORTHO05D000898 8.9e-23 112.1 69 82.6
Nitab4.5_0004050g0020 Nicotiana tabacum HOM05D000029 ORTHO05D008675 8.9e-23 112.1 145 47.6
Sabra18G0096100 Salix brachista HOM05D000029 ORTHO05D008675 1.5e-22 111.3 147 44.2
VMungo1309G2617 Vigna mungo HOM05D000029 ORTHO05D008675 2.0e-22 110.9 145 41.4
Ah.09g227120 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.4e-22 110.2 70 72.9
Phvul.009G208500 Phaseolus vulgaris HOM05D000029 ORTHO05D008675 3.4e-22 110.2 145 41.4
Ah.05g173030 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.4e-22 109.8 70 74.3
Ah.06g186220 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.9e-22 108.6 81 67.9
Thhalv10005775m.g Eutrema salsugineum HOM05D000029 ORTHO05D008675 9.9e-22 108.6 138 43.5
PGSC0003DMG400011833 Solanum tuberosum HOM05D000029 ORTHO05D008675 9.9e-22 108.6 149 45.6
Ah.01g012530 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.3e-21 108.2 89 62.9
Ca_25010_v3 Cicer arietinum L. HOM05D000029 ORTHO05D008675 6.4e-21 105.9 142 43.0
AL8G25620 Arabidopsis lyrata HOM05D000029 ORTHO05D008675 8.3e-21 105.5 134 43.3
Carub.0008s1139 Capsella rubella HOM05D000029 ORTHO05D008675 8.3e-21 105.5 134 43.3
Migut.K00657 Erythranthe guttata HOM05D000029 ORTHO05D008675 8.3e-21 105.5 124 42.7
Sopen07g001120 Solanum pennellii HOM05D000029 ORTHO05D008675 8.3e-21 105.5 149 45.0
Ah.01g013140 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.9e-20 104.4 91 61.5
Solyc07g005010.4 Solanum lycopersicum HOM05D000029 ORTHO05D008675 1.9e-20 104.4 149 45.0
Migut.K00363 Erythranthe guttata HOM05D000029 ORTHO05D008675 2.4e-20 104.0 124 42.7
Aa31sc462G20 Aethionema arabicum HOM05D000029 ORTHO05D008675 3.2e-20 103.6 139 41.7
Glyma.09G097500 Glycine max HOM05D000029 ORTHO05D008675 3.2e-20 103.6 144 43.1
Lj6g0013100 Lotus japonicus HOM05D000029 ORTHO05D008675 4.1e-20 103.2 146 41.1
Lalb_Chr11g0072811 Lupinus albus HOM05D000029 ORTHO05D008675 5.4e-20 102.8 132 41.7
ECA240G4437 Erigeron canadensis HOM05D000029 ORTHO05D008675 9.2e-20 102.1 135 41.5
Sp5g06380 Schrenkiella parvula HOM05D000029 ORTHO05D008675 1.2e-19 101.7 137 41.6
A09p49120 Brassica napus HOM05D000029 ORTHO05D008675 2.1e-19 100.9 134 41.8
BraA09t40364Z Brassica rapa HOM05D000029 ORTHO05D008675 2.1e-19 100.9 134 41.8
AT5G51350 Arabidopsis thaliana HOM05D000029 ORTHO05D008675 3.5e-19 100.1 134 41.8
Medtr2g029010 Medicago truncatula HOM05D000029 ORTHO05D008675 6.0e-19 99.4 151 40.4
Medtr2g449790 Medicago truncatula HOM05D000029 ORTHO05D008675 6.0e-19 99.4 148 41.2
THA.LOC104808930 Tarenaya hassleriana HOM05D000029 ORTHO05D008675 7.8e-19 99.0 136 41.9
Glyma.15G203600 Glycine max HOM05D000029 ORTHO05D008675 1.3e-18 98.2 134 42.5
PSO210G4668 Papaver somniferum HOM05D000029 ORTHO05D008675 3.9e-18 96.7 144 38.2
HanXRQChr09g0243301 Helianthus annuus HOM05D000029 ORTHO05D008675 5.1e-18 96.3 146 39.7
BcaB01g00027 Brassica carinata HOM05D000029 ORTHO05D008675 8.6e-18 95.5 134 41.8
Ah.06g183740 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.1e-17 95.1 88 58.0
CARHR104130 Cardamine hirsuta HOM05D000029 ORTHO05D008675 1.1e-17 95.1 133 39.8
Gohir.A06G096000 Gossypium hirsutum HOM05D000029 ORTHO05D008675 1.1e-17 95.1 93 52.7
TPR.G24777 Trifolium pratense HOM05D000029 ORTHO05D008675 1.9e-17 94.4 135 42.2
Ah.15g098990 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.3e-17 93.6 107 51.4
ATR0629G132 Amborella trichopoda HOM05D000029 ORTHO05D008675 3.3e-17 93.6 140 39.3
Ah.11g040890 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.3e-17 92.4 131 45.8
PSO210G6437 Papaver somniferum HOM05D000029 ORTHO05D008675 7.3e-17 92.4 144 36.8
Lsat_1_v5_gn_7_48300 Lactuca sativa HOM05D000029 ORTHO05D008675 9.5e-17 92.0 139 40.3
BcaC07g39929 Brassica carinata HOM05D000029 ORTHO05D008675 2.1e-16 90.9 134 38.8
BolC8t50764H Brassica oleracea HOM05D000029 ORTHO05D008675 2.1e-16 90.9 134 38.8
HanXRQChr03g0064511 Helianthus annuus HOM05D000029 ORTHO05D008675 2.8e-16 90.5 139 38.1
C08p31430 Brassica napus HOM05D000029 ORTHO05D008675 3.6e-16 90.1 134 38.8
Ah.13g069570 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.0e-15 86.7 46 95.7
Migut.K00662 Erythranthe guttata HOM05D000029 ORTHO05D008675 1.5e-14 84.7 89 44.9
Ah.02g121510 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.6e-14 84.0 99 43.4
Ah.02g119120 Amaranthus hybridus HOM05D000023 ORTHO05D002258 1.3e-13 81.6 93 44.1
Ah.02g119810 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.3e-13 81.6 112 41.1
Ah.10g026610 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.3e-13 81.6 112 41.1
Ah.07g198850 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.7e-13 81.3 112 41.1
Ah.02g120720 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.9e-13 80.5 112 40.2
Ah.02g122330 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.9e-13 79.7 250 28.8
Ah.07g200980 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.9e-13 79.7 112 40.2
Ah.09g226000 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.4e-13 79.3 92 45.7
Ah.07g197230 Amaranthus hybridus HOM05D002461 ORTHO05D000898 8.4e-13 79.0 118 38.1
Ah.10g029880 Amaranthus hybridus HOM05D002461 ORTHO05D000898 8.4e-13 79.0 93 41.9
Ah.09g227720 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.4e-12 78.2 93 43.0
Ah.02g118270 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.9e-12 77.8 112 39.3
Ah.05g174110 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.9e-12 77.8 93 40.9
Ah.08g221640 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.9e-12 77.8 257 28.4
Ah.07g201510 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.4e-12 77.4 250 28.4
Ah.08g221620 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.4e-12 77.4 250 28.4
Ah.15g099800 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.4e-12 76.3 149 33.6
Ah.05g174580 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.1e-12 75.9 93 43.0
Ah.06g183730 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.2e-12 75.5 83 51.8
Ah.01g010610 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.1e-11 74.3 153 34.0
Ah.04g160560 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.1e-11 74.3 112 38.4
Ah.04g157570 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.3e-10 70.9 101 38.6
Ah.16g110310 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.4e-07 60.8 48 72.9
Ah.16g109180 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.1e-07 60.5 98 43.9
GSVIVG01001044001 Vitis vinifera HOM05D000029 ORTHO05D008675 5.8e-06 56.2 72 44.4


User provided reference genes

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