Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-110 402.9 205 100.0
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.3e-63 246.1 191 71.7
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 6.5e-58 228.0 161 76.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.2e-57 225.3 198 65.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.7e-47 191.4 204 57.4
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.6e-46 189.5 191 60.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 8.5e-42 174.5 189 56.1
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.7e-29 132.5 195 48.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 8.2e-29 131.3 195 48.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 8.2e-29 131.3 196 46.4
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.4e-28 129.8 194 48.5
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 7.0e-28 128.3 202 46.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.2e-27 127.5 199 46.2
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.0e-26 124.4 185 47.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.9e-26 122.9 190 44.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.9e-26 122.9 185 48.1
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 3.8e-26 122.5 200 47.5
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.0e-26 122.1 193 44.0
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 6.5e-26 121.7 192 44.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 6.5e-26 121.7 193 46.1
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 6.5e-26 121.7 194 45.9
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.9e-25 120.2 213 42.3
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.5e-25 119.8 194 43.3
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 5.5e-25 118.6 194 45.4
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.2e-24 117.5 179 47.5
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.2e-24 117.5 186 43.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.1e-24 116.7 195 42.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.1e-24 116.7 189 45.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-24 116.7 195 44.6
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.7e-24 116.3 194 44.8
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.7e-24 115.5 193 45.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.0e-24 114.8 183 44.8
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.0e-23 114.4 176 45.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.4e-23 114.0 216 40.7
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-23 114.0 173 46.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.8e-23 113.6 192 44.3
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.8e-23 113.6 199 43.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.8e-23 113.6 175 48.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-23 113.2 200 41.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 4.0e-23 112.5 185 45.4
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 6.8e-23 111.7 206 44.2
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.2e-22 110.9 202 43.6
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.0e-22 110.2 190 43.7
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.4e-22 109.4 195 42.6
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.4e-22 109.4 195 42.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 4.4e-22 109.0 206 43.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.4e-22 109.0 188 44.1
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 7.5e-22 108.2 192 44.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.5e-22 108.2 186 44.1
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 9.8e-22 107.8 185 42.7
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 9.8e-22 107.8 180 41.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-21 107.5 186 45.2
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.3e-21 107.5 193 45.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.2e-21 106.7 187 43.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.8e-21 105.5 216 39.4
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 4.8e-21 105.5 148 50.0
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-20 104.4 212 39.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.4e-20 104.0 183 43.2
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.4e-20 104.0 205 41.0
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 3.1e-20 102.8 192 41.1
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.1e-20 102.8 203 39.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 5.4e-20 102.1 177 40.7
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 7.0e-20 101.7 213 38.0
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 9.1e-20 101.3 198 37.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-19 100.9 199 43.2
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.6e-19 100.5 195 42.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.6e-19 100.5 210 38.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.0e-19 100.1 184 41.3
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.0e-19 100.1 186 41.4
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.5e-19 99.4 162 46.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.5e-19 99.4 194 39.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 5.9e-19 98.6 185 42.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.0e-18 97.8 189 40.7
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.0e-18 97.8 199 39.7
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-18 97.4 147 51.0
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.9e-18 96.3 147 49.0
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.9e-18 96.3 210 34.3
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 5.0e-18 95.5 205 38.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 8.6e-18 94.7 184 39.1
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 8.6e-18 94.7 206 38.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.1e-17 94.4 180 36.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.5e-17 93.2 186 42.5
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.5e-17 93.2 195 38.5
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.2e-17 92.8 176 42.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 4.2e-17 92.4 199 36.2
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 5.5e-17 92.0 183 39.3
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 7.2e-17 91.7 187 40.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 7.2e-17 91.7 184 40.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 7.2e-17 91.7 184 40.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 9.5e-17 91.3 184 41.3
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.5e-17 91.3 196 37.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.5e-17 91.3 196 37.8
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.2e-16 90.9 184 44.6
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-16 90.9 171 43.9
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.2e-16 90.9 202 40.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 3.6e-16 89.4 184 40.8
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.1e-16 88.6 185 38.4
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 8.0e-16 88.2 187 40.6
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 8.0e-16 88.2 183 38.3
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.4e-15 87.4 190 38.4
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.3e-15 86.7 196 40.8
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.0e-15 85.9 199 37.7
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.2e-15 85.5 176 38.6
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 8.8e-15 84.7 201 34.8
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-14 84.3 190 37.4
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-14 84.3 173 37.6
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-14 84.0 176 38.1
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-14 84.0 176 38.1
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.5e-14 84.0 205 38.0
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.5e-14 84.0 203 32.5
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.0e-14 83.6 193 39.9
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.6e-14 83.2 180 39.4
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.4e-14 82.8 215 37.2
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.4e-14 82.8 189 34.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.4e-14 82.4 179 37.4
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.7e-14 82.0 209 37.3
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 7.5e-14 81.6 173 37.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.7e-13 80.5 138 48.6
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.7e-13 80.5 205 35.1
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.9e-13 79.0 191 37.2
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 6.3e-13 78.6 181 36.5
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.8e-12 77.0 197 34.0
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.1e-12 75.9 181 37.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 4.1e-12 75.9 181 37.0
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.5e-11 72.8 157 40.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 3.5e-11 72.8 180 37.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.5e-11 72.4 184 38.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.0e-10 71.2 149 34.9
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.0e-10 68.9 204 35.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-09 67.4 53 62.3
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 4.3e-09 65.9 97 40.2
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 5.6e-09 65.5 185 34.1
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 7.3e-09 65.1 158 39.2
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.3e-09 65.1 159 39.0
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 9.5e-09 64.7 141 40.4
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 9.5e-09 64.7 195 32.8
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.6e-08 63.9 132 41.7
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.6e-08 63.9 158 36.1
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.7e-08 62.4 179 33.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.1e-08 62.0 179 35.8
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.0e-07 61.2 170 35.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.8e-07 60.5 52 65.4
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 5.2e-07 58.9 166 31.9
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 8.9e-07 58.2 200 32.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.2e-06 57.8 183 34.4
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.6e-06 56.6 168 32.7
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 3.4e-06 56.2 195 31.3
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.4e-06 56.2 76 46.1


User provided reference genes

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