Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.0e-191 673.3 359 100.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.4e-132 476.9 384 73.4
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.0e-127 460.7 389 70.2
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.5e-126 456.8 388 69.6
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.2e-121 439.1 395 67.3
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.4e-102 375.9 397 61.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.3e-81 306.2 366 57.7
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 7.3e-81 305.1 399 52.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.1e-79 301.2 408 49.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.3e-79 300.1 391 51.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 5.2e-79 298.9 395 50.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 6.4e-77 292.0 338 55.6
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.0e-75 285.4 424 47.2
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 7.8e-75 285.0 395 49.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 7.8e-75 285.0 419 49.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.7e-74 283.9 406 48.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.3e-74 283.5 405 47.7
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-74 282.3 402 48.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 8.6e-74 281.6 391 47.8
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.5e-73 280.8 396 48.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.3e-73 279.6 408 47.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.2e-72 277.7 405 47.4
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.2e-72 277.7 408 47.3
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.6e-72 277.3 346 52.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.6e-72 277.3 400 45.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-72 277.3 390 47.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.2e-72 275.4 395 48.9
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.4e-71 274.2 420 48.3
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.4e-71 273.5 396 49.2
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.1e-71 273.1 337 51.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 6.8e-71 271.9 378 48.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 8.9e-71 271.6 390 50.3
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.5e-70 270.8 397 46.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.8e-69 266.2 413 47.0
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-68 264.2 400 46.0
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.4e-68 262.3 410 45.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 9.2e-68 261.5 397 48.1
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 9.2e-68 261.5 379 48.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.6e-67 260.8 388 48.5
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.6e-67 260.8 323 53.9
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 4.6e-67 259.2 393 46.8
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 6.0e-67 258.8 396 47.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.9e-66 256.1 399 45.4
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 8.7e-66 255.0 392 48.0
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-65 254.6 397 45.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.5e-65 254.2 394 48.0
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.3e-65 253.1 411 44.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 5.6e-65 252.3 418 43.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.3e-65 251.9 400 46.2
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.8e-64 250.0 411 45.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.4e-63 247.7 364 48.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.8e-63 247.3 421 44.9
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 6.9e-63 245.4 328 50.3
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.5e-62 244.2 396 43.9
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.5e-62 244.2 394 44.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.6e-62 243.4 337 50.1
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 9.9e-62 241.5 404 44.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.7e-61 240.7 303 51.5
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.7e-61 240.7 443 43.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.9e-61 240.0 409 43.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.8e-61 239.6 333 45.3
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 4.9e-61 239.2 359 47.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.1e-60 238.0 393 46.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-60 238.0 407 43.5
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.4e-60 237.7 359 46.5
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.4e-60 237.7 375 46.4
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.9e-60 237.3 346 48.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.2e-60 236.5 404 42.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.2e-60 236.1 331 45.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.1e-60 235.3 359 46.2
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.3e-60 235.0 333 44.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.7e-59 233.4 415 41.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.6e-59 232.6 359 45.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.3e-58 230.3 443 42.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-57 228.0 398 43.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.5e-57 227.6 398 44.5
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.5e-57 227.6 397 44.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.5e-57 226.9 398 43.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.6e-56 224.2 398 43.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 4.8e-56 222.6 409 42.5
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.8e-55 220.7 392 44.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.5e-54 217.6 397 42.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.7e-53 214.2 384 44.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.2e-53 213.8 345 44.1
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-53 213.4 325 46.8
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.9e-53 213.4 397 43.1
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.4e-52 210.3 393 44.0
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 4.2e-52 209.5 302 49.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 7.1e-52 208.8 374 42.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 9.3e-52 208.4 330 44.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 9.3e-52 208.4 401 42.4
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.5e-49 200.3 418 39.5
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 4.3e-49 199.5 401 39.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.7e-48 196.4 294 46.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-47 194.5 373 44.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.0e-47 193.0 335 41.2
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.5e-46 191.0 398 38.9
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.8e-46 189.1 335 46.6
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.9e-45 186.8 376 41.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.9e-45 186.0 376 41.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.4e-44 184.5 376 42.0
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.5e-44 183.7 379 43.3
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.2e-44 183.3 339 43.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.2e-44 183.3 403 39.7
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 9.3e-44 181.8 302 44.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.2e-43 181.4 255 48.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.5e-43 179.9 413 36.1
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.9e-43 178.7 277 48.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.9e-43 178.7 277 48.0
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.0e-42 178.3 376 41.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.0e-42 176.8 368 38.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.0e-42 176.8 368 38.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 6.7e-42 175.6 368 38.6
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.7e-42 175.3 367 39.0
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-41 174.9 285 47.0
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.3e-41 172.9 327 41.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.3e-41 172.9 385 40.3
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.3e-40 171.4 394 38.6
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.2e-35 154.8 179 53.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.5e-35 153.3 351 35.6
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.8e-34 151.0 339 39.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 4.8e-32 142.9 179 49.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.9e-29 133.7 322 37.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-28 129.8 213 46.5
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-28 129.8 213 46.5
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-25 119.8 200 48.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-24 117.9 175 53.1
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-24 117.5 180 47.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 2.4e-23 114.0 292 35.3
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 5.3e-23 112.8 118 58.5
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.2e-22 111.7 401 31.7
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 2.2e-21 107.5 382 33.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.5e-20 104.0 240 40.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.9e-19 99.0 317 34.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 7.9e-19 99.0 125 55.2
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.8e-18 97.8 86 60.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.0e-15 85.9 195 40.0
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.0e-15 85.9 195 40.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.1e-15 85.5 195 40.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.2e-14 85.1 219 34.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-14 84.3 195 39.5
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-14 84.3 125 41.6
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-14 84.0 195 39.5
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-14 83.6 195 39.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-11 73.9 164 40.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 5.2e-10 69.7 236 34.3
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 6.7e-10 69.3 79 54.4
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.7e-08 63.5 208 31.2
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.2e-06 58.5 75 52.0


User provided reference genes

Program Settings