Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.0e-90 336.7 164 100.0
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.4e-71 273.1 212 69.3
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.0e-66 255.4 189 72.5
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 2.1e-59 232.6 212 59.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.2e-58 228.0 212 60.4
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.3e-56 221.1 212 59.0
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 6.5e-53 211.1 211 55.0
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 2.0e-49 199.5 212 52.4
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.7e-37 159.8 210 45.2
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.7e-37 159.8 210 45.2
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.3e-32 143.7 209 43.1
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 6.4e-32 141.4 209 41.6
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-30 137.1 175 44.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.6e-27 125.6 207 35.3
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 4.7e-27 125.2 203 34.5
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.1e-26 122.5 202 35.1
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.6e-25 119.4 203 35.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.4 172 37.8
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 4.4e-25 118.6 207 34.8
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 8.3e-24 114.4 169 35.5
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.4e-23 113.6 207 32.9
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.4e-23 112.8 166 36.1
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.2e-23 112.5 127 46.5
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.1e-22 109.8 169 34.3
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-22 109.0 205 35.1
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 6.0e-22 108.2 168 35.1
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.0e-21 107.5 208 30.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.7e-21 106.7 193 31.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 3.9e-21 105.5 207 32.9
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.5e-20 103.6 170 36.5
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.5e-20 102.8 202 30.7
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.5e-20 102.8 202 30.7
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 5.6e-20 101.7 121 44.6
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.2e-19 100.5 166 34.3
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 2.8e-19 99.4 85 54.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.6e-19 99.0 210 30.5
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.6e-19 99.0 83 54.2
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 8.1e-19 97.8 181 35.9
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.4e-18 97.1 101 53.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.0e-18 95.5 205 30.2
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 4.0e-18 95.5 205 30.2
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 5.2e-18 95.1 208 30.3
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 8.9e-18 94.4 100 51.0
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.2e-17 94.0 159 32.7
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-17 94.0 100 51.0
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-17 92.8 76 55.3
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 7.6e-17 91.3 76 55.3
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 9.9e-17 90.9 100 49.0
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.7e-16 90.1 170 29.4
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.7e-16 90.1 157 35.7
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.7e-16 90.1 83 49.4
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-16 90.1 206 29.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-16 89.7 150 36.0
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.2e-16 89.7 100 48.0
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.9e-16 89.4 170 30.6
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-16 88.6 88 45.5
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-16 88.6 88 45.5
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-16 88.6 100 49.0
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-15 87.4 88 46.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-15 87.4 88 46.6
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-15 87.4 125 40.0
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-15 87.4 125 40.0
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-15 85.9 150 35.3
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.2e-15 85.9 84 45.2
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 2.1e-14 83.2 86 46.5
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.5e-14 82.4 171 35.7
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 3.5e-14 82.4 161 30.4
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-13 80.1 154 35.7
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 3.0e-13 79.3 192 30.7
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 3.0e-13 79.3 161 31.1
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 5.1e-13 78.6 136 36.8
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.1e-13 78.6 151 32.5
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 6.6e-13 78.2 211 29.9
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-12 77.4 184 32.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-12 76.6 74 51.4
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 3.3e-12 75.9 87 47.1
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-12 75.9 99 42.4
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-12 75.5 167 31.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 5.6e-12 75.1 165 32.1
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-12 75.1 153 31.4
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.3e-12 74.7 109 35.8
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.3e-12 74.7 92 43.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 9.6e-12 74.3 95 40.0
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 9.6e-12 74.3 209 27.8
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-11 73.6 166 27.7
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 1.6e-11 73.6 178 29.2
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.1e-11 73.2 96 43.8
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.6e-11 72.4 171 25.7
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.2e-11 71.6 88 42.0
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.1e-11 71.2 195 32.8
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-10 70.9 176 26.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.1e-10 70.9 209 26.8
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.4e-10 69.7 93 45.2
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.4e-10 69.7 120 35.8
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.4e-10 69.7 120 35.8
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-10 69.7 102 37.3
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.4e-10 69.7 83 44.6
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.0e-10 67.8 92 43.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-09 67.4 92 42.4
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-09 66.6 130 36.9
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 3.4e-09 65.9 101 36.6
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 3.4e-09 65.9 70 44.3
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.4e-09 65.5 97 38.1
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 4.4e-09 65.5 174 30.5
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.6e-09 64.7 101 34.7
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 7.6e-09 64.7 150 32.0
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.9e-09 64.3 103 35.9
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.9e-09 64.3 81 40.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-08 63.2 93 37.6
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-08 62.4 145 29.7
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 6.4e-08 61.6 77 46.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.4e-08 61.6 125 29.6
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.4e-08 61.2 144 23.6
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.4e-08 61.2 92 33.7
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.4e-07 60.5 108 34.3
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.9e-07 60.1 127 33.9
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-07 60.1 63 47.6
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 4.2e-07 58.9 99 41.4
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 7.1e-07 58.2 54 48.1
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.1e-07 58.2 90 34.4
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 9.3e-07 57.8 112 31.2
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.6e-06 57.0 107 30.8
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-06 56.6 80 43.8
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-06 56.6 116 37.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-06 56.6 116 37.1


User provided reference genes

Program Settings