Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.2e-126 456.4 217 100.0
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.3e-92 341.7 214 75.7
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 9.5e-92 340.5 214 76.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.7e-91 338.2 214 75.2
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 3.7e-88 328.6 214 73.8
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 8.9e-74 280.8 214 64.5
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.2e-73 280.4 217 60.8
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.2e-73 280.4 217 60.8
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-67 260.0 198 62.6
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.9e-52 209.9 214 50.0
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.4e-50 203.8 214 48.1
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.4e-42 177.2 208 46.6
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 9.0e-42 174.5 211 43.6
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-41 173.7 212 43.4
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.4e-41 172.6 208 45.2
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.8e-41 171.8 211 43.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-41 171.8 212 42.9
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-41 171.8 212 42.9
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.3e-40 170.6 208 46.6
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.8e-40 169.1 209 45.9
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 3.8e-40 169.1 209 44.5
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.2e-39 165.6 209 44.0
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.2e-38 164.1 213 41.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-38 164.1 206 44.7
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 6.0e-38 161.8 209 42.6
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.3e-37 160.6 209 43.5
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.7e-37 157.9 210 43.3
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.7e-37 157.9 210 43.3
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.9e-36 156.8 213 42.7
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.5e-36 156.4 210 42.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-34 151.0 206 41.3
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.8e-34 150.2 205 41.5
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 3.1e-34 149.4 207 43.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.3e-34 148.7 218 43.1
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 6.9e-34 148.3 163 47.2
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-33 145.6 203 42.9
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-33 145.6 203 42.9
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 7.6e-33 144.8 205 40.0
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 2.5e-31 139.8 217 40.6
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-31 138.7 181 44.2
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.6e-30 137.1 205 37.1
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.7e-30 136.3 139 48.9
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 2.7e-30 136.3 205 39.5
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-29 133.7 213 35.2
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 6.7e-29 131.7 205 42.0
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.5e-28 129.8 209 40.2
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.1e-27 126.7 205 38.5
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.7e-27 125.9 144 44.4
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 3.7e-27 125.9 208 37.0
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-27 125.9 199 38.2
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 8.2e-27 124.8 206 37.9
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.1e-26 124.4 244 37.7
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-26 124.4 204 37.3
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.4e-26 124.0 171 38.0
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.8e-26 123.6 207 39.6
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.8e-26 123.6 207 37.7
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.1e-26 122.9 205 37.6
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.1e-26 122.9 210 38.6
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-26 122.9 129 43.4
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-26 122.9 129 43.4
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-26 122.1 204 37.7
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 6.9e-26 121.7 207 35.3
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-25 120.9 129 44.2
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.5e-25 120.6 206 35.9
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.8 129 44.2
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.8 129 43.4
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.8 129 43.4
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-25 119.8 170 36.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.6e-25 118.2 198 36.4
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.0e-24 117.9 209 33.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-24 117.9 142 44.4
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-24 117.9 142 44.4
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-24 117.5 129 44.2
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 5.0e-24 115.5 209 32.1
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 6.5e-24 115.2 129 41.9
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 6.5e-24 115.2 129 42.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.5e-24 114.8 187 36.4
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-23 114.4 199 33.7
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.5e-23 113.2 129 41.1
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.5e-23 113.2 144 42.4
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-23 113.2 198 35.9
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-23 112.5 198 34.8
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.3e-23 111.3 205 35.1
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-22 110.9 209 34.0
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.6e-22 110.5 205 33.2
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.1e-22 110.2 161 37.3
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.7e-22 109.8 161 37.3
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 2.7e-22 109.8 161 37.3
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-22 109.8 203 34.0
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.1e-22 108.6 209 33.5
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-22 108.2 193 36.8
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 7.9e-22 108.2 168 34.5
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-21 106.7 159 37.1
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-20 103.6 201 31.8
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 2.5e-20 103.2 216 34.7
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.3e-20 102.4 122 44.3
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.7e-20 102.1 199 34.2
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.4e-20 101.7 204 35.3
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-18 96.3 211 32.2
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.1e-18 96.3 169 34.9
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.3e-18 95.5 157 35.7
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.9e-18 95.1 168 32.7
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.9e-18 95.1 122 41.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.9e-18 95.1 155 32.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.5e-17 94.0 156 39.7
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 1.5e-17 94.0 156 39.7
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-17 93.2 161 33.5
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-16 90.1 88 47.7
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.5e-16 88.6 193 32.6
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.5e-16 88.2 156 37.8
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-15 87.0 97 41.2
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.2e-15 85.9 185 34.1
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-15 85.9 149 30.2
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-14 84.3 140 34.3
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.7e-14 83.2 132 37.9
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 2.7e-14 83.2 201 29.9
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.1e-14 82.0 104 40.4
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.3e-13 80.1 159 33.3
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-13 78.2 144 33.3
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 2.6e-12 76.6 185 31.4
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.4e-12 75.9 138 35.5
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 5.7e-12 75.5 213 28.2
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.7e-11 73.9 141 34.8
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-11 73.9 159 28.3
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-11 73.9 147 32.0
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.7e-11 73.9 189 31.2
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.8e-11 73.2 147 36.7
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.1e-10 71.2 134 33.6
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-10 70.5 81 44.4
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.4e-10 70.1 69 44.9
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 2.4e-10 70.1 191 29.8
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-10 69.3 191 30.4
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 5.9e-09 65.5 148 33.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 5.9e-09 65.5 148 33.1
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-08 63.2 142 33.1
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.5e-07 58.9 73 38.4
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-06 57.4 121 32.2
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.9e-06 55.1 61 44.3


User provided reference genes

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