Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.5e-68 261.9 128 100.0
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.9e-48 195.3 125 77.6
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.3e-21 105.9 88 68.2
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.2e-21 104.8 93 55.9
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-20 103.6 131 40.5
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 3.3e-20 102.1 103 49.5
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.8e-19 98.2 94 54.3
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.8e-19 98.2 96 50.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-18 97.1 103 45.6
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.4e-18 96.7 102 44.1
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.1e-18 95.5 112 42.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 7.0e-18 94.4 91 52.7
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.6e-17 93.2 105 44.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.6e-17 93.2 105 42.9
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 4.5e-17 91.7 97 48.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 4.5e-17 91.7 86 51.2
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 5.9e-17 91.3 105 47.6
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.0e-16 90.5 107 48.6
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-16 90.1 98 49.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-16 90.1 100 48.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 2.2e-16 89.4 104 48.1
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.2e-16 89.4 80 53.8
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.9e-16 89.0 106 49.1
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 2.9e-16 89.0 89 55.1
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.8e-16 88.6 107 46.7
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.5e-16 87.8 81 53.1
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.5e-15 86.7 87 49.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.9e-15 86.3 76 53.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.9e-15 86.3 92 47.8
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.2e-15 85.5 94 46.8
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-15 85.5 98 48.0
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.2e-15 85.1 97 42.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 4.2e-15 85.1 88 46.6
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.2e-15 85.1 86 48.8
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.2e-15 85.1 108 42.6
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.2e-15 84.3 69 52.2
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 9.4e-15 84.0 79 46.8
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.4e-15 84.0 108 42.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.4e-15 84.0 107 43.0
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.2e-14 83.6 108 42.6
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.2e-14 83.6 62 59.7
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-14 83.2 108 45.4
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-14 83.2 108 45.4
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.1e-14 82.8 105 44.8
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.6e-14 82.0 101 44.6
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 4.7e-14 81.6 98 41.8
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.7e-14 81.6 94 45.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.1e-14 81.3 97 45.4
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.1e-14 81.3 83 48.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 6.1e-14 81.3 103 48.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 6.1e-14 81.3 106 42.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 8.0e-14 80.9 103 41.7
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.0e-13 80.5 108 42.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.0e-13 80.5 108 42.6
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.4e-13 80.1 114 36.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-13 80.1 86 46.5
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-13 79.7 97 46.4
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.8e-13 79.7 90 46.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.8e-13 79.7 89 47.2
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.8e-13 79.7 86 50.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.8e-13 79.7 80 51.2
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.8e-13 79.7 109 43.1
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.8e-13 79.7 107 43.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.3e-13 79.3 88 46.6
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.3e-13 79.3 101 43.6
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 3.0e-13 79.0 80 50.0
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.0e-13 79.0 80 50.0
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 3.0e-13 79.0 78 50.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.0e-13 79.0 80 51.2
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 4.0e-13 78.6 96 43.8
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.0e-13 78.6 96 43.8
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-13 78.6 101 43.6
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 5.2e-13 78.2 74 47.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 5.2e-13 78.2 82 50.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 5.2e-13 78.2 62 53.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 5.2e-13 78.2 69 50.7
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 5.2e-13 78.2 109 43.1
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 5.2e-13 78.2 61 54.1
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.8e-13 77.8 95 44.2
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 6.8e-13 77.8 96 45.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.8e-13 77.8 77 51.9
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 6.8e-13 77.8 88 45.5
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.8e-13 77.4 65 56.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 8.8e-13 77.4 105 42.9
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.5e-12 76.6 95 45.3
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.0e-12 76.3 88 47.7
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.0e-12 76.3 81 48.1
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-12 76.3 101 42.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.6e-12 75.9 93 41.9
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.6e-12 75.9 62 58.1
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.6e-12 75.9 90 48.9
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.4e-12 75.5 74 51.4
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.4e-12 75.5 78 48.7
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.4e-12 75.1 97 43.3
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.4e-12 75.1 96 42.7
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 4.4e-12 75.1 82 51.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 5.7e-12 74.7 53 64.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 5.7e-12 74.7 102 46.1
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 7.5e-12 74.3 86 44.2
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.5e-12 74.3 84 46.4
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.8e-12 73.9 90 44.4
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-11 73.6 92 43.5
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-11 73.2 67 52.2
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-11 72.8 77 46.8
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.2e-11 72.8 70 47.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.2e-11 72.8 70 48.6
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.8e-11 72.4 100 41.0
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 3.7e-11 72.0 68 54.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 4.8e-11 71.6 81 44.4
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.8e-11 71.6 81 46.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.8e-11 71.6 81 42.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 4.8e-11 71.6 63 55.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.3e-11 71.2 104 42.3
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 8.3e-11 70.9 91 42.9
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 8.3e-11 70.9 86 44.2
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.1e-10 70.5 77 49.4
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.1e-10 70.5 87 43.7
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.1e-10 70.5 81 44.4
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.4e-10 70.1 81 44.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.8e-10 69.7 74 45.9
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.8e-10 69.7 74 45.9
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.4e-10 69.3 81 45.7
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.4e-10 68.2 80 48.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.0e-10 67.8 80 45.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 9.1e-10 67.4 74 51.4
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 9.1e-10 67.4 74 41.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-09 67.0 121 34.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.2e-09 67.0 63 60.3
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.6e-09 66.6 43 65.1
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.6e-09 66.6 60 58.3
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.7e-09 65.9 80 43.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.7e-09 65.9 64 51.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.5e-09 65.5 64 50.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.5e-09 65.5 80 38.8
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.9e-09 64.7 56 53.6
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 7.7e-09 64.3 45 62.2
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.0e-08 63.9 79 43.0
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.3e-08 63.5 96 37.5
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.2e-08 62.8 72 47.2
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.9e-08 62.4 49 59.2
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.8e-08 62.0 54 53.7
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 1.9e-07 59.7 55 54.5
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.5e-07 59.3 99 36.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 9.4e-07 57.4 38 68.4
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 9.4e-07 57.4 75 38.7
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.6e-06 56.6 83 34.9
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 3.6e-06 55.5 59 40.7
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 8.0e-06 54.3 48 52.1


User provided reference genes

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