Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.7e-160 568.5 275 100.0
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.7e-27 126.7 230 35.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.6e-27 126.3 199 40.7
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.6e-27 126.3 199 40.7
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.8e-24 116.7 197 37.6
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.8e-24 116.7 194 38.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-23 113.6 244 34.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 9.1e-23 111.7 195 33.8
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-22 110.2 242 34.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.7e-21 107.5 213 31.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.2e-21 107.1 267 33.3
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.9e-21 106.7 211 31.3
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 3.8e-21 106.3 195 34.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 8.5e-21 105.1 195 36.4
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.2e-20 103.2 214 32.7
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.2e-20 102.8 271 30.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.7e-19 100.1 177 34.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.8e-18 97.4 200 29.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 3.9e-18 96.3 194 35.6
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.1e-18 95.9 201 33.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.7e-18 95.5 247 31.6
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 8.8e-18 95.1 200 29.5
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 9.7e-17 91.7 196 31.1
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.3e-16 91.3 197 33.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.2e-16 90.5 192 34.9
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.8e-16 90.1 208 32.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 4.8e-16 89.4 192 33.9
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 6.3e-16 89.0 231 30.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 6.3e-16 89.0 194 33.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 8.2e-16 88.6 199 28.6
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.1e-15 88.2 195 31.8
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.1e-15 88.2 197 32.5
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.8e-15 87.4 207 33.8
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.8e-15 87.4 224 30.8
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.8e-15 87.4 211 34.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.4e-15 87.0 204 32.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.4e-15 87.0 204 32.4
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.4e-15 87.0 216 32.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.1e-15 86.7 216 32.4
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 5.3e-15 85.9 192 35.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.3e-15 85.9 200 29.0
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 7.0e-15 85.5 194 32.0
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 9.1e-15 85.1 238 26.9
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.2e-14 84.7 192 35.9
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.2e-14 84.7 192 33.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.2e-14 84.7 267 29.2
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.6e-14 84.3 201 30.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.6e-14 84.3 189 32.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.6e-14 84.3 196 34.2
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-14 84.0 208 31.2
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-14 84.0 208 31.2
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.0e-14 84.0 213 30.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.0e-14 84.0 202 31.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.6e-14 83.6 219 30.1
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.5e-14 83.2 222 29.7
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.5e-14 83.2 194 32.5
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.5e-14 82.8 201 34.3
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.5e-14 82.8 201 34.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 4.5e-14 82.8 195 31.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 5.9e-14 82.4 210 33.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.9e-14 82.4 207 30.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 5.9e-14 82.4 196 32.1
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 5.9e-14 82.4 204 26.0
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.7e-14 82.0 236 29.2
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.7e-14 82.0 205 31.2
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 7.7e-14 82.0 186 34.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 7.7e-14 82.0 181 29.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-13 81.6 207 30.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.7e-13 80.9 203 31.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.7e-13 80.9 203 31.5
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.7e-13 80.9 207 30.4
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.7e-13 80.9 197 26.4
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 2.2e-13 80.5 203 31.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.2e-13 80.5 202 29.7
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.2e-13 80.5 202 30.7
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.9e-13 80.1 202 31.7
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.9e-13 80.1 236 30.1
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 2.9e-13 80.1 206 30.6
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 3.8e-13 79.7 208 29.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 5.0e-13 79.3 199 31.2
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 5.0e-13 79.3 231 29.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.0e-13 79.3 197 27.4
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 5.0e-13 79.3 204 30.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 8.5e-13 78.6 197 28.4
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.1e-12 78.2 195 29.7
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-12 78.2 196 31.6
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.5e-12 77.8 191 30.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-12 77.8 196 30.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.5e-12 77.8 210 30.5
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.5e-12 77.8 199 25.6
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-12 77.0 199 30.2
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.5e-12 77.0 199 30.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.5e-12 77.0 231 28.6
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.5e-12 77.0 183 26.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 3.2e-12 76.6 194 30.9
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 3.2e-12 76.6 220 28.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 3.2e-12 76.6 194 29.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.2e-12 76.6 181 30.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.2e-12 76.3 198 29.3
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 5.5e-12 75.9 197 27.4
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.5e-12 75.9 199 31.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.5e-12 75.9 199 31.2
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 7.2e-12 75.5 252 28.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 7.2e-12 75.5 210 29.0
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 9.4e-12 75.1 156 30.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-11 74.7 201 30.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.2e-11 74.7 190 29.5
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.6e-11 74.3 191 30.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.1e-11 73.9 200 28.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.1e-11 73.9 191 31.4
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.7e-11 73.6 199 29.1
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.6e-11 73.2 199 31.2
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.6e-11 73.2 214 32.2
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.6e-11 73.2 204 30.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.7e-11 72.8 201 30.8
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 6.1e-11 72.4 213 26.3
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 6.1e-11 72.4 201 28.4
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 6.1e-11 72.4 180 35.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 8.0e-11 72.0 202 28.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.0e-11 72.0 193 29.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 8.0e-11 72.0 192 31.2
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.0e-11 72.0 191 30.4
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.0e-10 71.6 180 31.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.0e-10 71.6 106 38.7
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.4e-10 71.2 200 26.5
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.4e-10 71.2 189 32.3
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-10 70.9 193 30.1
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-10 70.5 208 30.3
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.0e-10 69.7 193 28.5
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 4.0e-10 69.7 205 32.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.0e-10 69.7 189 30.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.0e-10 69.7 201 29.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.2e-10 69.3 193 29.5
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 8.8e-10 68.6 263 25.5
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-09 67.8 189 29.6
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.3e-09 66.6 199 28.1
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 4.4e-09 66.2 199 25.6
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 4.4e-09 66.2 201 28.4
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 5.7e-09 65.9 199 26.6
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 5.7e-09 65.9 199 26.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 7.5e-09 65.5 199 27.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 7.5e-09 65.5 199 27.6
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 7.5e-09 65.5 199 27.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 7.5e-09 65.5 183 30.6
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.7e-09 65.1 165 27.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 9.7e-09 65.1 190 28.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.7e-08 64.3 181 30.4
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.2e-08 63.9 165 27.9
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 3.7e-08 63.2 161 26.7
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.3e-08 62.4 175 27.4
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.8e-07 60.8 190 30.5
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.4e-07 60.5 178 28.1
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.1e-07 59.7 95 35.8
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.1e-07 59.7 189 27.0
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.6e-06 57.8 203 25.6
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.6e-06 57.8 157 26.1
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.7e-06 55.5 93 33.3


User provided reference genes

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