Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 8.8e-34 146.4 73 100.0
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.7e-16 89.0 72 68.1
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.8e-11 71.6 63 61.9
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.6e-11 71.2 61 63.9
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 8.0e-11 70.1 61 62.3
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.4e-10 69.3 61 62.3
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.1e-10 68.2 63 58.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 3.1e-10 68.2 63 60.3
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.2e-10 67.4 62 62.9
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.2e-10 67.4 61 62.3
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 8.9e-10 66.6 59 61.0
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 8.9e-10 66.6 64 59.4
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 8.9e-10 66.6 63 58.7
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.2e-09 66.2 61 57.4
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 1.5e-09 65.9 61 62.3
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.5e-09 65.9 61 59.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 2.0e-09 65.5 70 57.1
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.0e-09 65.5 60 60.0
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.6e-09 65.1 62 61.3
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.6e-09 65.1 62 61.3
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.4e-09 64.3 61 63.9
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 4.4e-09 64.3 61 57.4
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 5.8e-09 63.9 60 60.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.5e-09 63.5 59 59.3
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.5e-09 63.5 60 58.3
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.3e-08 62.8 62 58.1
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.3e-08 62.8 60 56.7
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.7e-08 62.4 78 52.6
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.7e-08 62.4 59 57.6
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.9e-08 61.6 60 55.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 3.7e-08 61.2 59 59.3
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.7e-08 61.2 60 56.7
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.7e-08 61.2 60 58.3
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 6.4e-08 60.5 59 57.6
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 8.3e-08 60.1 60 55.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 8.3e-08 60.1 62 53.2
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.1e-07 59.7 63 52.4
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.1e-07 59.7 62 61.3
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.4e-07 59.3 59 54.2
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.4e-07 59.3 60 58.3
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.4e-07 59.3 61 57.4
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-07 58.9 61 60.7
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-07 58.9 59 55.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-07 58.5 59 59.3
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 2.4e-07 58.5 59 55.9
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 7.0e-07 57.0 60 60.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 7.0e-07 57.0 61 57.4
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 7.0e-07 57.0 63 50.8
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.0e-07 57.0 60 55.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.2e-07 56.6 61 60.7
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.6e-06 55.8 61 57.4
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.6e-06 55.8 59 54.2
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 2.0e-06 55.5 58 53.4
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.0e-06 55.5 61 57.4
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.0e-06 55.5 60 56.7
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.0e-06 55.5 68 47.1
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.0e-06 55.5 61 54.1
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 2.7e-06 55.1 67 47.8
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.7e-06 55.1 60 50.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.5e-06 54.7 57 54.4
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.6e-06 54.3 62 53.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 4.6e-06 54.3 61 54.1
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 4.6e-06 54.3 61 55.7
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 6.0e-06 53.9 58 50.0
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 6.0e-06 53.9 62 50.0
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 7.8e-06 53.5 60 46.7
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 7.8e-06 53.5 74 47.3
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 7.8e-06 53.5 61 50.8


User provided reference genes

Program Settings