Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g086500 Amaranthus hybridus HOM05D000878 ORTHO05D062168 3.3e-46 188.0 90 100.0
Ah.09g232690 Amaranthus hybridus HOM05D000878 ORTHO05D004971 2.0e-11 72.4 71 54.9
EL10Ac8g19741 Beta vulgaris HOM05D000878 ORTHO05D004971 3.4e-11 71.6 71 53.5
AUR62027526 Chenopodium quinoa HOM05D000878 ORTHO05D004971 8.4e-10 67.0 71 50.7
AUR62030224 Chenopodium quinoa HOM05D000878 ORTHO05D004971 8.4e-10 67.0 71 50.7
Gohir.A11G031601 Gossypium hirsutum HOM05D000878 ORTHO05D004971 4.2e-09 64.7 83 45.8
Gorai.007G037800 Gossypium raimondii HOM05D000878 ORTHO05D004971 4.2e-09 64.7 83 45.8
COL.COLO4_04683 Corchorus olitorius HOM05D000878 ORTHO05D004971 5.4e-09 64.3 83 43.4
Manes.06G091900 Manihot esculenta HOM05D000878 ORTHO05D004971 5.4e-09 64.3 85 43.5
Lj4g0005214 Lotus japonicus HOM05D000878 ORTHO05D004971 7.1e-09 63.9 71 47.9
SMO259G0017 Selaginella moellendorffii HOM05D000878 ORTHO05D004971 7.1e-09 63.9 73 46.6
ECA232G2061 Erigeron canadensis HOM05D000878 ORTHO05D004971 1.2e-08 63.2 71 46.5
Sed0003482 Sechium edule HOM05D000878 ORTHO05D004971 1.2e-08 63.2 71 47.9
Sc11g0007110 Simmondsia chinensis HOM05D000878 ORTHO05D004971 1.2e-08 63.2 71 49.3
THA.LOC104821420 Tarenaya hassleriana HOM05D000878 ORTHO05D004971 1.2e-08 63.2 83 42.2
TWI15G0238 Tripterygium wilfordii HOM05D000878 ORTHO05D004971 1.2e-08 63.2 71 47.9
Actinidia04891 Actinidia chinensis HOM05D000878 ORTHO05D004971 1.6e-08 62.8 71 47.9
AL5G26750 Arabidopsis lyrata HOM05D000878 ORTHO05D004971 1.6e-08 62.8 83 42.2
AT3G47520 Arabidopsis thaliana HOM05D000878 ORTHO05D004971 1.6e-08 62.8 83 42.2
Carub.0005s1361 Capsella rubella HOM05D000878 ORTHO05D004971 1.6e-08 62.8 83 42.2
CARHR156160 Cardamine hirsuta HOM05D000878 ORTHO05D004971 1.6e-08 62.8 83 42.2
DCAR_016565 Daucus carota HOM05D000878 ORTHO05D004971 1.6e-08 62.8 71 46.5
Lalb_Chr13g0303211 Lupinus albus HOM05D000878 ORTHO05D004971 1.6e-08 62.8 71 45.1
Aa31LG4G16310 Aethionema arabicum HOM05D000878 ORTHO05D004971 2.1e-08 62.4 83 42.2
Eucgr.K02475 Eucalyptus grandis HOM05D000878 ORTHO05D004971 2.1e-08 62.4 71 46.5
Sp5g14360 Schrenkiella parvula HOM05D000878 ORTHO05D004971 2.1e-08 62.4 83 42.2
TWI60G0622 Tripterygium wilfordii HOM05D000878 ORTHO05D004971 2.1e-08 62.4 71 47.9
arahy.Tifrunner.gnm1.ann1.76IQRR Arachis hypogaea HOM05D000878 ORTHO05D004971 2.7e-08 62.0 83 42.2
BcaC01g01807 Brassica carinata HOM05D000878 ORTHO05D004971 2.7e-08 62.0 83 42.2
A06p20100 Brassica napus HOM05D000878 ORTHO05D004971 2.7e-08 62.0 83 42.2
C03p71710 Brassica napus HOM05D000878 ORTHO05D004971 2.7e-08 62.0 83 42.2
BolC3t19462H Brassica oleracea HOM05D000878 ORTHO05D004971 2.7e-08 62.0 83 42.2
Gohir.D11G035100 Gossypium hirsutum HOM05D000878 ORTHO05D004971 2.7e-08 62.0 71 47.9
PSO013G0085 Papaver somniferum HOM05D000878 ORTHO05D004971 3.5e-08 61.6 71 46.5
PSO832G3464 Papaver somniferum HOM05D000878 ORTHO05D004971 3.5e-08 61.6 71 46.5
Peaxi162Scf00274g00052 Petunia axillaris HOM05D000878 ORTHO05D004971 3.5e-08 61.6 71 46.5
ATR0564G247 Amborella trichopoda HOM05D000878 ORTHO05D004971 4.6e-08 61.2 71 46.5
BcaB01g00909 Brassica carinata HOM05D000878 ORTHO05D004971 4.6e-08 61.2 83 42.2
Thhalv10010432m.g Eutrema salsugineum HOM05D000878 ORTHO05D004971 4.6e-08 61.2 83 41.0
HanXRQChr02g0043601 Helianthus annuus HOM05D000878 ORTHO05D004971 4.6e-08 61.2 71 46.5
Potri.017G101900 Populus trichocarpa HOM05D000878 ORTHO05D004971 4.6e-08 61.2 83 42.2
MSTRG.23019 Avicennia marina HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 45.1
CSS0040190 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 45.1
Duzib205G0369 Durio zibethinus HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 46.5
ECA247G1529 Erigeron canadensis HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 45.1
Hma1.2p1_1936F.1_g308200 Hydrangea macrophylla HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 43.7
Hma1.2p1_2516F.1_g323680 Hydrangea macrophylla HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 43.7
Sed0023806 Sechium edule HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 46.5
unitig_578.g16261 Utricularia gibba HOM05D000878 ORTHO05D004971 6.0e-08 60.8 71 47.9
AagrBONN_evm.TU.Sc2ySwM_362.1776 Anthoceros agrestis HOM05D000878 ORTHO05D004971 7.8e-08 60.5 71 42.3
Cpa.g.sc423.5 Carica papaya HOM05D000878 ORTHO05D004971 7.8e-08 60.5 83 41.0
FvH4_5g14890 Fragaria vesca HOM05D000878 ORTHO05D004971 7.8e-08 60.5 71 43.7
Gohir.D03G093400 Gossypium hirsutum HOM05D000878 ORTHO05D004971 7.8e-08 60.5 83 42.2
Gorai.003G097400 Gossypium raimondii HOM05D000878 ORTHO05D004971 7.8e-08 60.5 83 42.2
Lalb_Chr07g0178081 Lupinus albus HOM05D000878 ORTHO05D004971 7.8e-08 60.5 71 43.7
Nn4g25036 Nelumbo nucifera HOM05D000878 ORTHO05D004971 7.8e-08 60.5 71 46.5
Rhsim05G0214500 Rhododendron simsii HOM05D000878 ORTHO05D004971 7.8e-08 60.5 71 45.1
BraA06t25096Z Brassica rapa HOM05D000878 ORTHO05D004971 1.0e-07 60.1 83 42.2
Dinv38716 Davidia involucrata HOM05D000878 ORTHO05D004971 1.0e-07 60.1 71 45.1
Migut.D01813 Erythranthe guttata HOM05D000878 ORTHO05D004971 1.0e-07 60.1 71 46.5
HanXRQChr09g0270821 Helianthus annuus HOM05D000878 ORTHO05D004971 1.0e-07 60.1 71 45.1
Oeu047010.2 Olea europaea HOM05D000878 ORTHO05D004971 1.0e-07 60.1 87 39.1
Psat4g051000 Pisum sativum HOM05D000878 ORTHO05D004971 1.0e-07 60.1 71 45.1
RcHm_v2.0_Chr7g0181501 Rosa chinensis HOM05D000878 ORTHO05D004971 1.0e-07 60.1 71 43.7
CAN.G837.24 Capsicum annuum HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 46.5
Ca_21819_v3 Cicer arietinum L. HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
DCAR_026053 Daucus carota HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
Glyma.05G026300 Glycine max HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
Gohir.A03G067000 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.3e-07 59.7 83 41.0
Lsat_1_v5_gn_4_108821 Lactuca sativa HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
Lj5P110T53 Lonicera japonica HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
PGR083G0597 Punica granatum HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
QL10p017096 Quercus lobata HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 43.7
SGA_v2.0_scaffold25G10915 Striga asiatica HOM05D000878 ORTHO05D004971 1.3e-07 59.7 73 49.3
TPR.G9254 Trifolium pratense HOM05D000878 ORTHO05D004971 1.3e-07 59.7 71 45.1
arahy.Tifrunner.gnm1.ann1.JDV80H Arachis hypogaea HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 45.1
FAN04G0395 Fragaria x ananassa HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
FAN08G3464 Fragaria x ananassa HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
FAN13G3029 Fragaria x ananassa HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
FAN18G3262 Fragaria x ananassa HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
Gohir.A07G066200 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 45.1
Gohir.D07G070700 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 45.1
Gorai.001G074600 Gossypium raimondii HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 45.1
MD06G1193800 Malus domestica HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 45.1
Nitab4.5_0000451g0100 Nicotiana tabacum HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
PGSC0003DMG400011570 Solanum tuberosum HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 42.3
PGSC0003DMG402025430 Solanum tuberosum HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 42.3
TAR374G1511 Trochodendron aralioides HOM05D000878 ORTHO05D004971 1.7e-07 59.3 71 43.7
Actinidia35000 Actinidia chinensis HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 45.1
Migut.I00183 Erythranthe guttata HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 45.1
Glyma.17G100600 Glycine max HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 45.1
MBI05_g34365_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 43.7
Manes.14G078500 Manihot esculenta HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 43.7
Potri.004G112800 Populus trichocarpa HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 45.1
Prupe.5G194200 Prunus persica HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 43.7
TAR622G1224 Trochodendron aralioides HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 43.7
GSVIVG01007997001 Vitis vinifera HOM05D000878 ORTHO05D004971 2.3e-07 58.9 71 43.7
Aqoxy3G03394 Aquilegia oxysepala HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
ClCG02G005430 Citrullus lanatus HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Ciclev10020378m.g Citrus clementina HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
MELO3C016050.2 Cucumis melo HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
CsaV3_1G002350 Cucumis sativus L. HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
CsaV3_7G028870 Cucumis sativus L. HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Duzib068G0095 Durio zibethinus HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Eucgr.B00511 Eucalyptus grandis HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
MBI13_g04783_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
MBI15_g36479_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Nitab4.5_0009145g0010 Nicotiana tabacum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
Os07g0630800 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
Pp3c17_6520 Physcomitrium patens HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 42.3
Potri.017G102000 Populus trichocarpa HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
PGR044G0764 Punica granatum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 73 45.2
Sabra17G0087700 Salix brachista HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
Sabra17G0087900 Salix brachista HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
SalBow7G2087 Salvia bowleyana HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
SEGI_11860 Sequoiadendron giganteum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 43.7
SEGI_28749 Sequoiadendron giganteum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 73 45.2
Solyc03g115990.3 Solanum lycopersicum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Sopen03g034980 Solanum pennellii HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Sopen09g034050 Solanum pennellii HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 42.3
PGSC0003DMG400019511 Solanum tuberosum HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
Thecc.03G089000 Theobroma cacao HOM05D000878 ORTHO05D004971 3.0e-07 58.5 71 45.1
VMungo1215G0211 Vigna mungo HOM05D003022 ORTHO05D003363 3.0e-07 58.5 71 43.7
CSS0050326 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 43.7
CANSAT78G0835 Cannabis sativa HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 45.1
Duzib084G0665 Durio zibethinus HOM05D000878 ORTHO05D004971 3.9e-07 58.2 85 41.2
Lsat_1_v5_gn_9_45660 Lactuca sativa HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 45.1
MBI13_g04784_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 45.1
Os01g0829800 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 43.7
Os08g0434300 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 43.7
Phvul.003G189700 Phaseolus vulgaris HOM05D000878 ORTHO05D004971 3.9e-07 58.2 71 43.7
Cfa018937 Carpinus fangiana HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
Haze_07321 Corylus avellana HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
Nitab4.5_0001128g0090 Nicotiana tabacum HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
Nitab4.5_0006000g0090 Nicotiana tabacum HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
Oeu022208.1 Olea europaea HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
HPP92_011250 Vanilla planifolia HOM05D000878 ORTHO05D004971 5.1e-07 57.8 71 43.7
CAN.G812.41 Capsicum annuum HOM05D000878 ORTHO05D004971 6.6e-07 57.4 71 40.8
Sabra04G0072100 Salix brachista HOM05D000878 ORTHO05D004971 6.6e-07 57.4 71 43.7
MSTRG.9628 Avicennia marina HOM05D000878 ORTHO05D004971 8.7e-07 57.0 71 43.7
Cre03.g194850 Chlamydomonas reinhardtii HOM05D000878 ORTHO05D004971 8.7e-07 57.0 71 45.1
Psat4g028720 Pisum sativum HOM05D000878 ORTHO05D004971 8.7e-07 57.0 71 43.7
SHI24193 Sapria himalayana HOM05D000878 ORTHO05D004971 8.7e-07 57.0 71 43.7
GSVIVG01011422001 Vitis vinifera HOM05D000878 ORTHO05D438764 8.7e-07 57.0 71 43.7
Zm00001eb179730 Zea mays HOM05D000878 ORTHO05D004971 8.7e-07 57.0 71 42.3
ATR0626G197 Amborella trichopoda HOM05D000878 ORTHO05D004971 1.1e-06 56.6 71 40.8
EL10Ac5g11025 Beta vulgaris HOM05D000878 ORTHO05D004971 1.1e-06 56.6 71 39.4
CiPaw.11G045000 Carya illinoinensis HOM05D000878 ORTHO05D004971 1.1e-06 56.6 71 43.7
Sabra17G0087600 Salix brachista HOM05D000878 ORTHO05D000001 1.5e-06 56.2 71 42.3
Zm00001eb041400 Zea mays HOM05D000878 ORTHO05D004971 1.5e-06 56.2 71 42.3
HPP92_016792 Vanilla planifolia HOM05D000878 ORTHO05D004971 1.9e-06 55.8 71 42.3
HPP92_016832 Vanilla planifolia HOM05D000878 ORTHO05D004971 1.9e-06 55.8 71 42.3
CSS0033057 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 2.5e-06 55.5 71 42.3
CSS0040062 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 2.5e-06 55.5 71 42.3
CARHR089980 Cardamine hirsuta HOM05D000878 ORTHO05D001408 2.5e-06 55.5 71 45.1
CDE08G1275 Ceratophyllum demersum HOM05D000878 ORTHO05D004971 2.5e-06 55.5 71 40.8
MSTRG.11382 Avicennia marina HOM05D000878 ORTHO05D004971 3.3e-06 55.1 71 40.8
Cfa001715 Carpinus fangiana HOM05D000878 ORTHO05D033946 3.3e-06 55.1 58 46.6
AUR62008422 Chenopodium quinoa HOM05D000878 ORTHO05D004971 3.3e-06 55.1 71 39.4
Pp3c14_9020 Physcomitrium patens HOM05D000878 ORTHO05D004971 3.3e-06 55.1 71 40.8
AUR62021673 Chenopodium quinoa HOM05D000878 ORTHO05D004971 4.3e-06 54.7 71 39.4
Ciclev10008562m.g Citrus clementina HOM05D000878 ORTHO05D001408 4.3e-06 54.7 71 42.3
Cc04_g16570 Coffea canephora HOM05D000878 ORTHO05D004971 4.3e-06 54.7 71 42.3
TWI39G0631 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 4.3e-06 54.7 71 42.3
AL3G27360 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 43.7
AT3G15020 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 43.7
Cpa.g.sc131.66 Carica papaya HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 42.3
CDE04G1733 Ceratophyllum demersum HOM05D000878 ORTHO05D000404 5.6e-06 54.3 71 39.4
MELO3C017175.2 Cucumis melo HOM05D000878 ORTHO05D004971 5.6e-06 54.3 47 57.4
Duzib235G0391 Durio zibethinus HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 42.3
Sp3g13220 Schrenkiella parvula HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 43.7
unitig_0.g2272 Utricularia gibba HOM05D000878 ORTHO05D001408 5.6e-06 54.3 71 43.7
Zm00001eb328310 Zea mays HOM05D000878 ORTHO05D004971 5.6e-06 54.3 72 44.4
CSS0042910 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D033946 7.3e-06 53.9 70 40.0
CiPaw.11G163200 Carya illinoinensis HOM05D000878 ORTHO05D001408 7.3e-06 53.9 71 43.7
Peaxi162Scf01503g00019 Petunia axillaris HOM05D000878 ORTHO05D001408 7.3e-06 53.9 71 45.1
Solyc07g062650.4 Solanum lycopersicum HOM05D000878 ORTHO05D001408 7.3e-06 53.9 71 43.7
Solyc09g091070.3 Solanum lycopersicum HOM05D000878 ORTHO05D004971 7.3e-06 53.9 47 53.2
Sopen07g030880 Solanum pennellii HOM05D000878 ORTHO05D001408 7.3e-06 53.9 71 43.7
CBR_g11149 Chara braunii HOM05D000878 ORTHO05D004971 9.6e-06 53.5 73 42.5
Eucgr.F01209 Eucalyptus grandis HOM05D000878 ORTHO05D001408 9.6e-06 53.5 71 40.8
Mapoly0134s0005 Marchantia polymorpha HOM05D000878 ORTHO05D001408 9.6e-06 53.5 71 42.3
Thecc.07G104800 Theobroma cacao HOM05D000878 ORTHO05D001408 9.6e-06 53.5 71 42.3
TWI38G1905 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 9.6e-06 53.5 71 42.3
vmacro09502 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 9.6e-06 53.5 71 42.3


User provided reference genes

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