Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 3332.3 1714 100.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2518.0 1743 75.8
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2493.8 1743 76.2
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2463.0 1722 75.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2215.3 1691 67.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1720 67.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2189.8 1691 67.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2189.1 1733 66.3
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2188.3 1695 67.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2186.8 1684 66.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2180.6 1749 66.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2167.5 1689 67.4
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2166.0 1688 68.4
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1694 66.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 1720 65.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2162.1 1680 66.4
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2158.3 1689 67.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2154.8 1710 65.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2154.4 1730 65.7
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2152.9 1742 65.2
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2145.2 1688 66.3
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2144.4 1726 65.1
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2142.9 1627 67.2
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2140.5 1699 65.7
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2135.1 1720 64.4
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2133.6 1682 66.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2132.8 1701 65.5
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2132.1 1710 64.9
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2127.8 1728 64.6
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2120.9 1668 64.7
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2114.7 1692 65.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2113.6 1700 65.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2112.4 1748 63.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1491 70.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2107.0 1728 63.7
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2100.1 1712 64.2
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2098.6 1736 63.4
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2092.4 1687 64.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2092.0 1696 64.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2087.0 1685 63.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2085.1 1704 64.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2080.8 1687 64.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2080.4 1696 63.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2080.1 1682 63.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2080.1 1694 64.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2076.6 1679 64.0
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2073.5 1684 64.3
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2067.4 1728 63.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2058.9 1715 63.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2056.6 1715 63.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2056.6 1743 62.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2055.0 1742 62.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2043.5 1736 62.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2043.5 1683 63.7
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2041.9 1698 63.5
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2041.5 1760 61.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2037.7 1680 63.4
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2035.8 1681 63.7
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2035.4 1721 61.1
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2035.0 1730 62.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2028.8 1676 63.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2026.9 1673 63.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2015.0 1692 63.3
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2012.3 1727 62.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2010.3 1758 61.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2004.2 1705 60.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1998.4 1695 62.9
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1996.5 1695 62.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1995.3 1718 61.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1992.6 1698 62.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1992.6 1726 61.8
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1991.5 1719 61.7
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1990.3 1704 62.1
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1978.0 1695 61.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1969.9 1784 59.6
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1967.2 1415 69.3
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1950.6 1852 58.2
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1933.3 1630 61.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1926.0 1775 59.5
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1897.9 1636 62.0
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1865.9 2101 51.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1833.9 1710 57.1
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1826.2 1675 57.4
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1817.4 1297 68.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1813.5 1565 59.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1809.3 1293 68.1
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1745.3 1700 55.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1742.2 1659 57.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1733.4 1452 62.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1713.0 1159 71.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1678.3 1771 54.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1606.3 1609 53.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1598.6 1663 52.3
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1593.2 1663 50.6
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1563.1 1693 50.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1553.1 1391 59.7
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1537.3 1711 53.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1513.4 1712 48.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1465.3 1046 68.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1421.4 935 72.5
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1364.4 1083 60.6
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1283.1 1102 62.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1250.0 1358 52.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1234.6 1107 62.1
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1188.7 739 79.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1182.9 1149 58.1
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.5e-304 1049.7 909 57.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.9e-294 1014.6 899 63.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.3e-268 931.0 616 73.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.2e-247 858.6 682 60.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 8.5e-244 848.6 600 68.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.2e-235 819.7 550 72.2
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.0e-229 800.8 806 58.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.7e-212 744.6 1546 33.4
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.0e-193 680.2 845 41.8
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 5.1e-172 610.1 424 70.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 5.3e-145 520.4 376 68.1
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 5.5e-142 510.4 329 76.0
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.4e-137 495.7 563 57.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-123 449.5 887 33.0
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.4e-110 406.0 602 50.0
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.0e-104 385.6 424 46.0
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 8.5e-103 380.2 694 36.5
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.5e-99 369.4 531 51.0
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 6.1e-93 347.4 365 54.8
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 8.0e-93 347.1 244 65.2
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 9.1e-89 333.6 220 71.4
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.5e-86 324.3 218 69.3
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-73 283.5 189 70.4
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.6e-69 269.6 363 52.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.2e-68 264.6 176 68.8
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 8.9e-60 237.3 176 61.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 7.1e-49 201.1 154 66.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.3e-46 192.2 193 46.1
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.4e-44 186.8 115 79.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.2e-40 173.7 97 86.6
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 3.3e-38 165.6 441 34.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 3.4e-35 155.6 128 57.0
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 2.4e-33 149.4 129 58.1
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 6.0e-32 144.8 205 45.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.8e-29 135.2 123 52.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.5e-25 122.9 87 64.4
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.2e-25 122.1 168 42.3
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.1e-24 119.8 71 81.7
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.0e-23 117.5 95 62.1
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.7e-23 114.4 63 88.9
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.4e-22 111.3 61 80.3
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.3e-21 110.5 83 65.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.4e-20 107.1 73 75.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.5e-19 102.1 102 51.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.3e-18 100.5 262 37.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 8.4e-18 97.8 211 35.5
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.6e-16 93.6 57 78.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 8.7e-15 87.8 60 66.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 3.3e-14 85.9 249 38.6
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.3e-13 84.0 98 40.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 8.2e-13 81.3 91 51.6
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 8.2e-13 81.3 48 81.2
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.3e-12 78.6 250 38.4
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.0e-11 76.6 54 63.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.0e-11 76.6 52 71.2
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.5e-09 69.7 41 73.2
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 5.5e-09 68.6 61 60.7
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 9.4e-09 67.8 95 37.9
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.1e-08 66.6 70 48.6
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 6.1e-08 65.1 42 64.3
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 1.0e-07 64.3 144 42.4
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.3e-07 63.2 162 29.6
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 6.7e-07 61.6 44 65.9
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-06 57.8 102 31.4


User provided reference genes

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