Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 0.0e+00 2200.6 1107 100.0
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 0.0e+00 1476.1 1113 70.9
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 0.0e+00 1452.6 1113 71.0
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 0.0e+00 1442.6 1113 69.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.3e-289 998.4 1094 54.5
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 4.9e-285 984.9 1161 50.9
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.2e-280 968.0 1141 50.8
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.4e-276 956.8 1137 49.7
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.3e-274 950.3 1135 49.5
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.5e-265 920.2 1111 49.6
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.6e-264 916.8 1154 48.4
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 2.1e-264 916.4 1126 49.4
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.1e-264 916.4 1117 48.8
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.1e-263 912.5 1147 48.4
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 3.1e-263 912.5 1123 48.0
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 9.9e-262 907.5 1145 48.6
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.3e-261 907.1 1143 48.1
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.0e-258 897.5 1124 48.8
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 5.1e-258 895.2 1130 48.5
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 5.1e-258 895.2 1137 48.2
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.6e-258 894.8 1116 47.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.3e-257 892.5 1134 47.4
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.3e-257 892.1 1128 49.0
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 9.6e-257 891.0 1126 48.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 9.6e-257 891.0 1117 48.4
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.3e-256 890.6 1126 48.0
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.1e-256 889.8 943 55.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.6e-256 889.0 1133 47.6
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 8.1e-256 887.9 1119 47.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.8e-255 886.7 1123 47.3
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 9.0e-255 884.4 1104 49.0
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.6e-254 882.9 1133 47.2
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.6e-254 882.9 1167 45.9
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 4.5e-254 882.1 1144 46.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 5.8e-254 881.7 1108 47.9
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 7.6e-254 881.3 1146 47.1
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 8.4e-253 877.9 1102 48.2
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.1e-252 877.5 1118 46.8
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 9.3e-252 874.4 1137 47.4
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 2.1e-251 873.2 1107 48.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 6.0e-251 871.7 1140 46.2
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.3e-250 870.5 1125 47.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.8e-250 870.2 1113 46.9
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.1e-248 861.3 1019 50.7
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.8e-247 860.1 1147 45.9
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 3.1e-247 859.4 1112 48.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 5.3e-247 858.6 1098 48.6
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 6.9e-247 858.2 1108 47.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.6e-246 856.3 1096 49.0
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.3e-245 854.0 1123 47.5
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.7e-245 853.6 1205 43.9
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.9e-245 852.0 1115 47.4
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 8.4e-245 851.3 1129 48.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.6e-243 847.0 1154 46.2
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 2.7e-243 846.3 1081 47.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 6.2e-240 835.1 1133 45.5
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.4e-239 833.9 1184 44.6
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.6e-238 829.7 967 51.4
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 7.1e-236 821.6 1134 45.6
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 2.1e-235 820.1 1101 46.2
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 7.9e-235 818.1 1133 46.2
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.3e-234 817.4 1120 44.1
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 5.1e-234 815.5 1051 49.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 6.3e-232 808.5 1097 46.9
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.1e-231 807.7 1163 43.5
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 5.3e-231 805.4 1134 44.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 6.9e-231 805.1 1114 43.3
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 9.0e-231 804.7 1124 44.7
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-230 804.3 1114 43.3
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 2.6e-230 803.1 1132 43.3
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.6e-230 803.1 1117 43.3
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 4.5e-230 802.4 1115 43.8
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.5e-230 802.4 1112 44.3
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.0e-229 801.2 1119 43.0
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.3e-229 800.8 1127 44.4
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.2e-229 800.0 1114 43.2
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 5.0e-229 798.9 985 48.6
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 5.0e-229 798.9 1003 49.6
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 7.2e-228 795.0 1124 42.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 9.4e-228 794.7 1144 44.2
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.6e-227 793.9 1123 43.5
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.7e-227 793.1 1116 44.1
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 6.1e-227 792.0 1137 44.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 3.0e-226 789.6 1116 44.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.3e-225 785.8 963 49.5
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.7e-224 782.7 1116 43.4
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 4.8e-224 782.3 1127 43.5
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.1e-223 781.2 1167 42.1
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 5.3e-223 778.9 1117 43.2
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 5.3e-223 778.9 1117 43.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 9.1e-223 778.1 1124 43.3
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.5e-222 777.3 1101 44.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.5e-222 775.8 1129 43.3
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.7e-221 773.9 1143 41.6
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.7e-221 773.9 1126 45.3
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 8.5e-221 771.5 1118 43.0
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.1e-220 771.2 1127 42.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 5.5e-220 768.8 1132 43.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 7.2e-220 768.5 1116 43.0
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 9.4e-220 768.1 1044 44.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.1e-215 753.1 1128 41.8
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 4.2e-212 742.7 1145 43.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.8e-210 737.3 1139 41.1
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.8e-207 727.2 706 58.6
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.5e-206 723.0 1130 41.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.0e-205 721.5 875 50.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.5e-205 718.4 651 60.8
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.3e-202 710.3 1183 41.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.3e-200 704.5 1135 40.7
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 3.5e-198 696.4 770 52.5
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.0e-191 672.2 652 57.7
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.7e-189 667.5 653 57.9
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.0e-186 658.3 800 50.2
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.2e-184 650.6 555 63.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.2e-184 650.6 684 54.8
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.9e-184 650.2 525 66.3
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.6e-182 644.4 445 72.4
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 4.6e-182 642.9 850 46.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.6e-171 606.7 866 45.2
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.0e-162 576.6 697 51.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.4e-160 568.9 648 51.7
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 3.5e-158 563.5 1118 36.6
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.1e-154 550.4 647 51.9
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 8.4e-152 542.3 896 42.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.4e-152 542.3 924 40.2
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.4e-151 539.7 914 39.3
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 5.6e-132 476.5 969 37.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-125 454.5 273 83.2
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-125 454.5 273 83.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.4e-122 444.5 765 37.4
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.8e-115 421.0 674 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 4.2e-103 380.6 328 57.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-87 328.9 206 80.1
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 2.7e-86 324.7 725 35.6
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.4e-82 311.6 611 37.3
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.4e-82 310.5 611 37.2
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-77 293.9 421 45.1
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.1e-58 233.0 226 53.1
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 4.1e-50 204.5 142 71.1
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.6e-41 174.5 620 27.3
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 6.6e-40 170.6 125 64.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 8.6e-40 170.2 614 30.3
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.1e-39 169.9 157 59.9
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.6e-38 166.0 92 88.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.1e-31 143.3 159 54.7
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 4.8e-30 137.9 94 69.1
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.6e-25 122.9 404 28.2
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.2e-18 98.2 67 65.7
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.0e-11 77.0 198 25.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 3.9e-08 65.1 278 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.5e-07 63.2 183 30.1
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 1.9e-07 62.8 89 42.7
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 6.3e-06 57.8 109 37.6


User provided reference genes

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