Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.0e-174 616.7 320 100.0
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.1e-135 486.1 377 69.8
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.1e-131 473.8 355 72.1
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.8e-131 473.0 378 69.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 4.4e-130 468.4 351 70.1
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.6e-125 451.4 339 67.0
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 8.1e-124 447.6 366 63.7
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.2e-121 439.5 366 63.7
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 2.9e-121 439.1 365 65.8
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.4e-121 438.0 356 65.4
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.4e-120 436.8 379 62.8
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.9e-120 436.4 344 65.4
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 4.2e-120 435.3 376 60.1
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 7.1e-120 434.5 361 66.5
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 9.3e-120 434.1 375 65.6
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 9.3e-120 434.1 375 65.6
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 9.3e-120 434.1 372 61.0
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 9.3e-120 434.1 368 65.2
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 9.3e-120 434.1 366 62.3
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.6e-119 433.3 351 64.1
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.6e-119 433.3 366 62.6
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.1e-119 433.0 360 66.7
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.1e-119 433.0 386 60.6
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.1e-119 433.0 376 61.2
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 2.7e-119 432.6 375 65.6
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 2.7e-119 432.6 375 65.6
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.7e-119 432.6 376 61.4
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.6e-119 431.8 375 65.6
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 7.9e-119 431.0 368 64.4
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 7.9e-119 431.0 372 64.8
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.8e-118 429.9 373 61.1
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.8e-118 429.9 373 61.1
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.3e-118 429.5 376 61.4
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 3.0e-118 429.1 358 63.1
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 3.9e-118 428.7 372 61.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 5.1e-118 428.3 374 61.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 6.7e-118 427.9 342 64.9
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 6.7e-118 427.9 360 62.8
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 8.7e-118 427.6 381 61.9
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.1e-117 427.2 371 61.5
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.1e-117 427.2 354 63.6
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.9e-117 426.4 367 61.6
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 1.9e-117 426.4 375 61.3
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.5e-117 426.0 348 64.1
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 2.5e-117 426.0 368 61.7
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.5e-117 426.0 363 63.6
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 2.5e-117 426.0 371 61.5
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 4.3e-117 425.2 348 64.4
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 4.3e-117 425.2 368 61.4
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 7.4e-117 424.5 373 62.2
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.6e-117 424.1 359 62.4
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 9.6e-117 424.1 348 64.7
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 1.6e-116 423.3 363 63.4
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.6e-116 423.3 322 66.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.1e-116 422.9 362 63.0
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 2.1e-116 422.9 349 62.8
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.1e-116 422.9 325 65.8
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 2.8e-116 422.5 345 62.9
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.8e-116 422.5 366 61.7
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 3.6e-116 422.2 347 61.1
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 3.6e-116 422.2 353 63.7
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.8e-116 421.8 350 61.1
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 6.2e-116 421.4 361 63.4
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 8.1e-116 421.0 309 68.6
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 8.1e-116 421.0 367 61.0
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.8e-115 419.9 365 62.5
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.8e-115 419.9 402 57.7
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.8e-115 419.9 402 57.7
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 2.4e-115 419.5 359 62.7
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-115 419.5 359 62.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-115 419.5 371 60.4
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.3e-115 418.3 371 60.6
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 5.3e-115 418.3 390 62.1
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.3e-115 418.3 350 60.6
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 6.9e-115 417.9 380 63.2
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 6.9e-115 417.9 350 60.3
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 9.0e-115 417.5 379 60.9
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 9.0e-115 417.5 370 60.3
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 9.0e-115 417.5 371 60.6
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.2e-114 417.2 368 58.7
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.5e-114 416.8 363 62.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.5e-114 416.8 355 60.3
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.0e-114 416.4 370 60.5
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.0e-114 416.4 364 61.0
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.5e-114 415.2 366 63.1
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.5e-114 415.2 371 60.4
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 4.5e-114 415.2 391 57.8
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.8e-114 414.8 371 59.8
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 5.8e-114 414.8 306 68.6
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 5.8e-114 414.8 306 69.0
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 9.9e-114 414.1 377 61.5
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 9.9e-114 414.1 353 60.6
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.3e-113 413.7 361 61.5
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 2.2e-113 412.9 345 62.0
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 2.2e-113 412.9 378 56.9
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.2e-113 412.9 366 60.1
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.2e-113 412.9 344 61.0
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 6.4e-113 411.4 352 61.6
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.1e-112 410.6 356 60.4
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 1.1e-112 410.6 359 61.6
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.4e-112 410.2 322 65.2
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.9e-112 409.8 313 65.8
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.4e-112 409.5 360 60.8
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.5e-112 408.3 308 67.5
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 5.5e-112 408.3 353 60.1
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 7.1e-112 407.9 336 63.1
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 9.3e-112 407.5 347 61.4
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.6e-111 406.8 370 61.9
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 4.6e-111 405.2 360 60.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 6.0e-111 404.8 313 66.5
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.0e-110 404.1 313 66.1
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 1.3e-110 403.7 308 66.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.1e-110 401.7 313 66.1
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 5.1e-110 401.7 345 60.3
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 6.7e-110 401.4 361 60.7
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.1e-109 400.6 313 64.5
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.5e-109 400.2 345 61.4
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.5e-109 399.4 302 65.2
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 8.1e-108 394.4 376 56.1
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.4e-107 393.7 343 59.8
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 4.0e-107 392.1 349 59.0
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 2.9e-105 386.0 318 62.6
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 4.2e-104 382.1 466 48.1
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 5.5e-104 381.7 298 65.4
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 9.3e-104 380.9 328 60.4
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 4.6e-103 378.6 338 61.8
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 3.3e-101 372.5 345 55.4
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 2.9e-97 359.4 384 52.3
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.9e-97 359.4 271 66.4
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 7.2e-96 354.8 325 65.8
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 5.7e-93 345.1 336 53.6
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.3e-92 344.0 283 62.2
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 2.2e-92 343.2 310 61.0
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.8e-92 342.8 268 66.4
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.8e-91 340.1 306 55.2
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.5e-90 337.0 304 55.6
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 7.7e-90 334.7 294 58.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.5e-88 329.7 294 58.2
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.6e-87 327.0 306 54.6
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 4.6e-87 325.5 305 54.1
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.1e-87 325.1 361 47.4
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 7.9e-87 324.7 363 51.5
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 5.7e-85 318.5 372 50.3
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.3e-84 317.4 356 50.0
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.7e-84 317.0 313 60.1
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.4e-83 313.9 310 53.2
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.0e-81 307.8 247 62.3
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.3e-77 292.7 403 44.2
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 4.2e-72 275.8 223 65.5
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 7.2e-72 275.0 263 56.3
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.3e-65 254.2 154 74.0
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.8e-62 241.5 221 57.5
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 1.4e-54 217.6 171 65.5
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 2.8e-47 193.4 252 48.4
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 6.4e-36 155.6 91 78.0
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 1.5e-32 144.4 97 74.2
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 8.9e-30 135.2 92 68.5
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 4.9e-28 129.4 113 59.3
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.6e-25 119.0 183 39.9
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 8.1e-23 112.1 292 29.5
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.8e-22 110.9 84 59.5
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 4.0e-22 109.8 65 75.4
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 7.6e-21 105.5 143 36.4
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 7.8e-18 95.5 68 70.6
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 7.8e-18 95.5 68 70.6
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.0e-17 93.6 130 41.5
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 3.0e-17 93.6 68 70.6
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 3.6e-15 86.7 66 72.7
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.3e-12 78.2 129 32.6
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 9.3e-11 72.0 122 35.2
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 2.1e-10 70.9 77 51.9
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.7e-10 70.5 90 50.0
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.1e-08 65.1 41 73.2
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 4.3e-08 63.2 35 77.1
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 2.8e-07 60.5 35 80.0
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 4.8e-07 59.7 35 77.1
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 4.8e-07 59.7 32 84.4
HanXRQChr05g0141861 Helianthus annuus HOM05D000001 ORTHO05D009862 5.3e-06 56.2 50 58.0


User provided reference genes

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