Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 7.7e-68 260.4 134 100.0
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 9.5e-18 94.0 60 76.7
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 9.5e-18 94.0 60 76.7
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 2.1e-17 92.8 58 79.3
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.6e-15 85.9 59 72.9
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 4.9e-14 81.6 59 67.8
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.2e-12 77.0 61 60.7
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.1e-12 76.3 58 63.8
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 6.0e-12 74.7 61 60.7
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 7.8e-12 74.3 59 55.9
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.7e-11 73.2 62 59.7
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 2.3e-11 72.8 61 62.3
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 3.0e-11 72.4 59 54.2
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 3.9e-11 72.0 85 51.8
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 5.1e-11 71.6 61 55.7
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 6.6e-11 71.2 61 60.7
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 6.6e-11 71.2 69 52.2
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 1.1e-10 70.5 58 56.9
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 1.1e-10 70.5 61 57.4
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 1.1e-10 70.5 59 59.3
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 1.5e-10 70.1 58 53.4
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.5e-10 70.1 61 57.4
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.5e-10 70.1 61 57.4
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 1.5e-10 70.1 61 57.4
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 1.9e-10 69.7 61 57.4
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.9e-10 69.7 59 57.6
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.9e-10 69.7 59 57.6
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.9e-10 69.7 123 35.8
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 1.9e-10 69.7 60 56.7
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 1.9e-10 69.7 61 59.0
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 2.5e-10 69.3 58 55.2
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 2.5e-10 69.3 61 59.0
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 3.3e-10 68.9 58 51.7
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 3.3e-10 68.9 58 53.4
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 3.3e-10 68.9 61 57.4
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 4.3e-10 68.6 58 53.4
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 5.6e-10 68.2 61 55.7
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 5.6e-10 68.2 58 53.4
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 5.6e-10 68.2 66 51.5
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 7.3e-10 67.8 59 57.6
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 9.6e-10 67.4 58 51.7
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 9.6e-10 67.4 61 55.7
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.2e-09 67.0 58 51.7
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.2e-09 67.0 57 52.6
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.6e-09 66.6 59 55.9
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 1.6e-09 66.6 61 49.2
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 2.8e-09 65.9 53 62.3
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.8e-09 65.9 58 51.7
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.8e-09 65.9 58 51.7
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 2.8e-09 65.9 91 42.9
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.8e-09 65.9 59 50.8
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.8e-09 65.9 59 50.8
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 3.6e-09 65.5 61 55.7
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 4.7e-09 65.1 82 45.1
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 6.2e-09 64.7 67 50.7
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 6.2e-09 64.7 61 55.7
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 6.2e-09 64.7 61 52.5
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 6.2e-09 64.7 59 52.5
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.1e-08 63.9 82 43.9
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.1e-08 63.9 58 55.2
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 1.4e-08 63.5 61 49.2
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 1.8e-08 63.2 59 50.8
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.8e-08 63.2 59 50.8
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 1.8e-08 63.2 61 49.2
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 1.8e-08 63.2 59 50.8
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 2.4e-08 62.8 59 49.2
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 3.1e-08 62.4 61 50.8
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 4.0e-08 62.0 58 51.7
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 4.0e-08 62.0 86 43.0
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 5.2e-08 61.6 59 52.5
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 8.9e-08 60.8 59 49.2
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 8.9e-08 60.8 58 48.3
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 1.2e-07 60.5 61 49.2
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.5e-07 60.1 59 50.8
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 2.0e-07 59.7 61 47.5
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 2.6e-07 59.3 46 60.9
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 3.4e-07 58.9 59 50.8
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 3.4e-07 58.9 58 51.7
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 4.4e-07 58.5 61 49.2
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 7.6e-07 57.8 112 37.5
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 9.9e-07 57.4 61 45.9
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 1.3e-06 57.0 59 45.8
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 2.2e-06 56.2 61 44.3
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 3.8e-06 55.5 55 49.1


User provided reference genes

Program Settings