Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 0.0e+00 1226.5 642 100.0
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.3e-310 1067.8 649 86.4
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.6e-296 1021.1 648 82.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.9e-295 1017.7 648 82.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 8.8e-295 1016.5 642 81.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 5.4e-260 901.0 654 72.9
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 7.0e-260 900.6 642 74.0
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.2e-259 899.8 657 73.2
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.7e-259 898.7 645 73.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-257 893.3 650 73.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.5e-257 892.9 650 72.0
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.5e-257 892.1 650 73.1
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.2e-256 889.8 647 71.7
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-256 889.8 636 74.1
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.2e-256 889.8 647 73.3
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.6e-256 888.3 652 71.5
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 6.2e-256 887.5 650 72.8
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 1.0e-255 886.7 647 71.6
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.0e-255 886.7 646 71.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.0e-255 886.7 646 73.4
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.3e-255 885.6 640 73.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 4.0e-255 884.8 659 70.6
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 2.6e-254 882.1 644 72.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.8e-254 880.2 645 72.1
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.8e-254 880.2 645 72.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 9.8e-254 880.2 645 71.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.3e-253 879.8 643 71.2
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.7e-253 879.4 647 70.9
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.7e-253 879.4 659 70.4
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 8.3e-253 877.1 642 72.6
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.4e-252 876.3 644 72.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 2.4e-252 875.5 646 72.1
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 4.1e-252 874.8 645 71.9
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.1e-252 874.8 645 71.5
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.6e-251 872.8 647 71.4
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 7.8e-251 870.5 646 71.1
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.0e-250 870.2 650 70.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.7e-250 869.4 634 71.6
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 2.3e-250 869.0 644 71.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 3.9e-250 868.2 647 71.3
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.6e-250 867.1 644 71.3
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.5e-249 866.3 652 70.7
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.5e-249 865.5 645 70.4
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 4.3e-249 864.8 644 71.4
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.2e-248 863.2 646 69.7
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.6e-248 862.8 650 68.9
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 3.6e-248 861.7 630 74.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 4.7e-248 861.3 651 71.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 6.2e-248 860.9 648 70.1
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 8.1e-248 860.5 651 69.6
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.1e-247 860.1 642 72.1
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 5.2e-247 857.8 642 68.1
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 5.2e-247 857.8 647 70.3
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 6.8e-247 857.4 649 70.3
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.2e-246 856.7 649 70.0
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.6e-246 855.5 653 70.1
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 3.4e-246 855.1 648 69.6
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 7.5e-246 854.0 628 72.0
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.7e-245 852.8 631 71.0
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.7e-245 852.8 652 70.2
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 8.3e-245 850.5 654 70.5
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.1e-244 850.1 645 69.5
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.6e-243 846.3 652 69.8
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 6.0e-243 844.3 650 69.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 6.0e-243 844.3 650 69.7
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.3e-242 842.4 650 69.5
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.5e-241 839.0 648 69.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 7.3e-241 837.4 652 68.7
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.3e-241 837.4 577 75.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 9.5e-241 837.0 631 70.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.8e-240 835.5 642 68.8
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.6e-240 835.1 641 70.4
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.7e-240 834.7 641 70.4
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 5.2e-239 831.2 654 68.5
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-238 829.7 652 67.8
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.6e-238 827.4 651 68.7
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.2e-237 825.9 648 68.5
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-235 820.1 653 68.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 3.5e-235 818.5 646 67.2
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.7e-234 816.2 655 67.5
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.7e-234 816.2 651 67.0
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-234 815.8 656 67.4
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 3.9e-234 815.1 654 67.6
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 6.6e-234 814.3 653 67.5
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.1e-233 813.5 659 66.8
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.9e-233 812.8 655 67.2
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 7.3e-233 810.8 653 67.4
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 9.6e-233 810.4 662 66.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 9.6e-233 810.4 647 66.2
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 9.6e-233 810.4 653 67.2
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.2e-232 810.1 654 67.1
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.6e-232 809.7 578 73.9
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 2.1e-232 809.3 653 66.8
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.1e-232 809.3 657 67.1
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 3.1e-231 805.4 639 66.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 4.0e-231 805.1 645 67.9
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 6.8e-231 804.3 657 66.5
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.2e-230 803.5 654 66.4
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 2.6e-230 802.4 659 66.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 8.4e-229 797.3 650 66.5
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 4.2e-228 795.0 651 65.0
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.1e-223 780.4 640 64.7
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.4e-223 779.2 657 65.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.0e-223 778.5 649 65.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-222 776.9 650 63.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.0e-218 762.3 643 62.8
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 8.1e-216 754.2 644 61.6
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.4e-214 748.8 646 65.5
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.3e-202 710.3 624 63.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.1e-201 707.2 645 59.5
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.1e-200 703.0 649 59.8
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.9e-196 689.9 651 57.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.9e-194 682.2 634 61.8
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.9e-194 682.2 648 58.6
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 3.3e-193 679.1 540 68.7
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 9.7e-193 677.6 650 57.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 8.8e-186 654.4 639 59.0
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.5e-166 589.0 649 53.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.9e-166 588.6 632 55.5
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.8e-162 577.0 549 59.9
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 7.0e-151 538.5 665 47.2
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.6e-147 527.3 665 45.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.2e-144 516.9 632 51.6
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 4.7e-123 446.0 658 42.2
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.2e-120 437.2 351 66.4
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 4.2e-111 406.4 328 69.8
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 4.0e-90 336.7 243 66.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.5e-89 333.2 384 49.2
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 3.7e-67 260.4 297 51.5
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.3e-40 171.4 566 27.9
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 4.2e-39 167.2 113 77.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 4.0e-37 160.6 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 6.2e-22 110.2 115 56.5
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.5e-15 89.0 91 54.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.1e-10 72.8 44 77.3
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.1e-10 70.9 108 39.8
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.8e-09 66.6 52 59.6
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.8e-06 58.2 46 58.7


User provided reference genes

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