Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 8.0e-115 417.2 217 100.0
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 8.7e-45 184.5 206 55.3
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 4.5e-41 172.2 220 47.7
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 9.3e-39 164.5 207 49.8
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 4.3e-20 102.4 192 39.6
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.7e-16 90.5 209 34.4
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.2e-16 90.1 208 35.6
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.9e-16 89.7 98 45.9
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.1e-15 87.8 88 50.0
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.6e-14 82.8 202 33.7
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 6.1e-14 82.0 90 50.0
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 7.9e-14 81.6 75 53.3
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.0e-13 81.3 92 44.6
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.0e-13 81.3 100 44.0
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 3.0e-13 79.7 66 56.1
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 5.1e-13 79.0 224 33.5
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 5.1e-13 79.0 100 38.0
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 5.1e-13 79.0 163 37.4
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 6.7e-13 78.6 89 44.9
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 8.8e-13 78.2 108 39.8
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.1e-12 77.8 101 45.5
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 2.0e-12 77.0 205 31.7
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.0e-12 77.0 92 40.2
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.0e-12 77.0 73 49.3
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.6e-12 76.6 229 32.3
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.6e-12 76.6 162 34.0
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.3e-12 76.3 207 30.4
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 9.7e-12 74.7 115 36.5
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.3e-11 74.3 76 51.3
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.3e-11 74.3 213 32.4
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.7e-11 73.9 75 50.7
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 3.7e-11 72.8 105 40.0
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 6.3e-11 72.0 203 32.0
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.3e-11 72.0 89 39.3
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 8.2e-11 71.6 166 34.9
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.4e-10 70.9 213 30.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 4.1e-10 69.3 213 27.2
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 5.3e-10 68.9 97 44.3
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 5.3e-10 68.9 66 54.5
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 6.9e-10 68.6 112 40.2
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 9.1e-10 68.2 86 43.0
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 9.1e-10 68.2 63 52.4
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.5e-09 67.4 68 50.0
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.5e-09 67.4 69 49.3
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 1.5e-09 67.4 211 29.4
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.0e-09 67.0 63 47.6
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.6e-09 66.6 63 50.8
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.6e-09 66.6 63 50.8
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.6e-09 66.6 63 50.8
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 5.9e-09 65.5 209 31.1
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 5.9e-09 65.5 89 43.8
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 7.7e-09 65.1 67 44.8
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.0e-08 64.7 63 49.2
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.0e-08 64.7 63 49.2
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.0e-08 64.7 90 36.7
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.0e-08 64.7 108 42.6
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.0e-08 64.7 107 39.3
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.3e-08 64.3 90 35.6
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.7e-08 63.9 204 32.4
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 2.9e-08 63.2 95 41.1
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 2.9e-08 63.2 64 50.0
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 3.8e-08 62.8 87 41.4
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 5.0e-08 62.4 72 45.8
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.0e-08 62.4 100 39.0
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 6.5e-08 62.0 68 48.5
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 6.5e-08 62.0 68 48.5
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 6.5e-08 62.0 74 43.2
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 6.5e-08 62.0 74 43.2
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 6.5e-08 62.0 203 28.1
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 6.5e-08 62.0 63 47.6
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 8.5e-08 61.6 93 34.4
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.1e-07 61.2 67 41.8
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 1.4e-07 60.8 54 51.9
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.9e-07 60.5 68 48.5
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 1.9e-07 60.5 163 33.1
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 2.5e-07 60.1 57 47.4
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 2.5e-07 60.1 57 47.4
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 2.5e-07 60.1 57 47.4
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.5e-07 60.1 184 31.0
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 2.5e-07 60.1 63 54.0
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 3.2e-07 59.7 80 42.5
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 4.2e-07 59.3 98 34.7
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 5.5e-07 58.9 66 47.0
Prupe.1G085100 Prunus persica HOM05D015664 ORTHO05D008524 5.5e-07 58.9 131 37.4
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 5.5e-07 58.9 91 37.4
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 7.2e-07 58.5 115 37.4
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 7.2e-07 58.5 109 32.1
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 7.2e-07 58.5 109 31.2
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 9.4e-07 58.2 42 57.1
ATR0580G212 Amborella trichopoda HOM05D007262 ORTHO05D008524 1.6e-06 57.4 72 44.4
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 1.6e-06 57.4 69 43.5
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 1.6e-06 57.4 63 46.0
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 1.6e-06 57.4 76 42.1
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.6e-06 57.4 178 28.7
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 1.6e-06 57.4 98 33.7
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 2.1e-06 57.0 74 40.5
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.1e-06 57.0 60 45.0
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.7e-06 56.6 68 44.1
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.7e-06 56.6 83 43.4
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 2.7e-06 56.6 61 49.2
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 3.6e-06 56.2 50 52.0
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 3.6e-06 56.2 60 46.7
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 3.6e-06 56.2 61 49.2
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 3.6e-06 56.2 69 42.0
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 3.6e-06 56.2 60 43.3
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 4.7e-06 55.8 72 41.7
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 4.7e-06 55.8 72 41.7
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 4.7e-06 55.8 72 41.7
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 4.7e-06 55.8 65 50.8
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 4.7e-06 55.8 208 27.4
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 4.7e-06 55.8 73 39.7
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 6.1e-06 55.5 56 44.6
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 6.1e-06 55.5 69 42.0
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 6.1e-06 55.5 76 40.8
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 6.1e-06 55.5 74 44.6
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 6.1e-06 55.5 77 36.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 7.9e-06 55.1 96 31.2
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.9e-06 55.1 76 40.8
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.9e-06 55.1 60 41.7
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.9e-06 55.1 60 41.7
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.9e-06 55.1 60 41.7
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 7.9e-06 55.1 66 45.5
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 7.9e-06 55.1 69 44.9
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 7.9e-06 55.1 61 47.5


User provided reference genes

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