Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.2e-127 458.4 224 100.0
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.4e-66 255.0 243 58.0
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 9.2e-66 254.2 247 55.9
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.0e-64 250.8 243 57.6
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.0e-64 249.2 257 56.0
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.6e-55 217.6 248 52.0
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.1e-48 195.3 243 45.7
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.4e-42 177.2 234 45.7
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 4.2e-42 175.6 247 45.3
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 6.6e-40 168.3 248 45.6
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.7e-40 167.9 247 44.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.5e-39 166.4 241 43.2
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 5.6e-39 165.2 251 43.4
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.4e-39 164.9 241 44.4
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 9.6e-39 164.5 249 45.8
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.6e-38 163.7 244 44.7
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.1e-38 163.3 249 43.8
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.8e-38 162.9 241 43.6
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 2.8e-38 162.9 246 42.7
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 2.8e-38 162.9 245 43.7
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.6e-38 162.5 246 43.5
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.8e-38 162.2 243 41.6
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 6.2e-38 161.8 251 42.6
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.4e-37 160.6 241 43.6
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.0e-36 156.8 242 41.7
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 9.9e-36 154.5 250 42.4
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.3e-35 154.1 243 42.4
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.2e-35 153.3 246 41.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.9e-35 152.9 196 50.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.4e-35 151.4 256 41.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.1e-34 151.0 248 42.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.4e-34 150.6 241 44.0
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.9e-34 150.2 248 43.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.4e-34 149.8 256 41.4
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 5.5e-34 148.7 239 39.3
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 7.1e-34 148.3 251 41.8
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.2e-33 147.5 241 44.0
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.5e-33 146.0 241 41.5
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.8e-32 143.7 243 42.4
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.8e-32 143.7 240 39.2
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.3e-32 143.3 244 40.6
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.0e-32 142.9 261 38.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.9e-32 142.5 233 41.2
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.9e-31 140.2 234 39.3
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.6e-31 138.7 247 39.7
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 7.4e-31 138.3 229 41.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.6e-30 137.1 237 40.9
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.6e-30 137.1 240 40.8
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.1e-30 136.7 241 40.7
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 2.1e-30 136.7 240 42.9
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.8e-30 136.3 245 39.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.7e-30 136.0 247 39.7
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 8.1e-30 134.8 240 39.6
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.1e-29 134.4 240 40.8
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.4e-29 134.0 236 39.4
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.4e-29 133.3 241 41.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 3.1e-29 132.9 219 43.8
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.0e-29 132.5 237 40.9
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.3e-29 132.1 239 40.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.6e-28 129.8 243 41.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 3.4e-28 129.4 219 41.6
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 4.5e-28 129.0 241 36.9
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.8e-28 128.6 235 37.0
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 7.6e-28 128.3 253 36.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.3e-27 127.5 265 38.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.7e-27 127.1 234 36.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.7e-27 127.1 264 38.6
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.2e-27 126.7 245 38.0
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 2.9e-27 126.3 229 36.2
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.8e-27 125.9 235 36.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-26 124.4 245 38.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.2e-26 122.9 251 37.1
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 4.2e-26 122.5 252 36.5
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.2e-25 120.9 235 39.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.6e-25 120.6 238 37.4
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.6e-25 120.6 248 35.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.0e-24 117.9 232 36.2
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.3e-24 117.5 227 39.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 2.3e-24 116.7 250 36.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.0e-24 116.3 230 36.5
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 5.1e-24 115.5 256 37.5
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 6.7e-24 115.2 257 36.2
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.9e-23 113.6 240 37.5
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.5e-23 113.2 250 37.2
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 5.7e-23 112.1 192 39.6
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.3e-22 110.9 241 35.3
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.6e-22 110.5 235 37.9
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.6e-22 110.5 228 37.3
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 8.2e-22 108.2 262 35.9
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.1e-21 107.8 242 33.9
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.8e-21 107.1 243 35.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 3.1e-21 106.3 242 33.5
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.3e-21 105.5 225 35.1
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.2e-20 104.4 196 37.2
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.4e-20 102.8 235 36.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 4.5e-20 102.4 227 34.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 5.9e-20 102.1 239 35.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.9e-18 97.1 247 33.6
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.6e-17 94.0 244 33.6
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 6.1e-17 92.0 240 32.5
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.3e-16 90.1 236 30.9
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 6.7e-16 88.6 235 33.2
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.1e-15 87.8 217 31.8
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.1e-15 87.8 239 31.0
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.5e-15 87.4 239 29.3
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 6.3e-14 82.0 238 29.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.4e-13 80.9 247 34.0
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.4e-13 80.9 251 31.5
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.3e-13 79.0 249 31.3
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.2e-12 77.8 232 30.6
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.6e-12 76.6 237 28.7
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.6e-12 76.6 237 28.7
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.6e-12 76.6 237 28.7
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.6e-12 76.6 237 30.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.6e-12 76.6 219 32.0
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.6e-12 76.6 219 32.0
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 5.9e-12 75.5 247 30.8
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 7.7e-12 75.1 240 31.7
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-11 74.3 128 38.3
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 3.8e-11 72.8 236 31.8
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 3.8e-11 72.8 130 37.7
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 3.8e-11 72.8 242 28.1
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 5.0e-11 72.4 126 41.3
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-10 71.2 130 36.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-10 70.9 118 47.5
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 3.2e-10 69.7 123 39.0
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 5.5e-10 68.9 250 26.8
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-09 67.8 120 40.0
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 4.6e-09 65.9 158 31.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 2.3e-08 63.5 241 27.8
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 3.0e-08 63.2 93 41.9
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 3.9e-08 62.8 255 25.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 5.1e-08 62.4 147 32.7
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-06 57.0 70 44.3
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 6.3e-06 55.5 70 44.3


User provided reference genes

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