Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.2e-158 563.1 297 100.0
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.2e-116 423.7 298 77.5
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.6e-116 422.5 299 78.3
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.6e-113 413.3 299 74.2
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.4e-108 395.2 306 73.9
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.3e-91 340.5 301 66.8
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 6.7e-80 301.6 287 58.9
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 2.8e-78 296.2 298 58.4
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 9.0e-77 291.2 274 59.5
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 9.0e-77 291.2 305 57.0
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.4e-76 289.3 300 57.7
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 3.4e-76 289.3 300 57.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-75 287.3 299 57.2
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.9e-75 286.2 302 57.0
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 3.8e-75 285.8 292 54.5
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 6.5e-75 285.0 305 56.4
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.9e-74 283.5 303 57.4
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 2.5e-74 283.1 299 54.8
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 4.2e-74 282.3 299 60.2
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 9.3e-74 281.2 300 54.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.7e-73 279.6 296 53.7
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.3e-72 277.3 294 56.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.9e-71 273.5 302 57.9
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.3e-71 272.7 287 61.0
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 5.7e-71 271.9 300 55.7
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 7.4e-71 271.6 314 51.9
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.2e-70 270.0 268 57.5
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 4.8e-70 268.9 294 54.1
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 8.2e-70 268.1 299 59.5
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 8.2e-70 268.1 297 58.6
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.1e-69 267.7 298 54.7
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 4.1e-69 265.8 299 53.5
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 5.3e-69 265.4 303 55.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.2e-68 264.2 306 52.9
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.5e-68 262.3 313 50.8
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 3.8e-67 259.2 310 57.1
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 3.8e-67 259.2 301 53.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.0e-67 258.8 304 55.9
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 6.5e-67 258.5 295 54.2
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 6.5e-67 258.5 298 54.4
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 1.4e-66 257.3 289 53.6
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.9e-66 256.9 294 54.4
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.2e-66 256.1 285 50.9
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.2e-66 255.0 277 53.4
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 2.1e-65 253.4 307 51.8
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.1e-65 253.4 303 51.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.7e-65 253.1 297 51.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.6e-65 252.7 288 54.2
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 3.6e-65 252.7 301 53.5
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.3e-64 250.0 308 52.3
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.8e-64 248.1 297 54.9
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.8e-64 248.1 297 54.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.8e-64 248.1 300 54.7
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.0e-63 246.9 287 50.2
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.5e-63 246.5 299 54.8
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 2.5e-63 246.5 299 54.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 3.3e-63 246.1 298 49.3
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 9.7e-63 244.6 299 50.2
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.3e-62 244.2 267 55.8
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.7e-62 243.8 306 52.3
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 8.2e-62 241.5 306 52.9
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.4e-61 240.7 306 54.2
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.8e-61 240.4 258 57.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 6.9e-61 238.4 308 49.4
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 9.1e-61 238.0 250 55.2
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.2e-60 237.7 304 53.0
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.5e-60 237.3 288 53.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.6e-60 236.5 316 49.1
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 4.5e-60 235.7 299 55.5
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 7.7e-60 235.0 320 47.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 7.7e-60 235.0 295 52.9
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.7e-59 233.8 299 51.8
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.7e-59 233.8 299 51.8
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.2e-59 233.4 290 50.3
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 2.2e-59 233.4 399 41.4
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.9e-59 233.0 299 50.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 2.9e-59 233.0 302 49.7
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.8e-59 232.6 297 50.2
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.4e-58 230.7 298 51.7
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 4.2e-58 229.2 280 52.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 7.2e-58 228.4 300 50.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 2.7e-57 226.5 297 47.1
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 4.7e-57 225.7 298 50.3
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 4.7e-57 225.7 264 54.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 7.9e-57 224.9 297 48.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.3e-56 223.4 304 48.0
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 6.7e-56 221.9 299 48.8
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.1e-55 221.1 300 47.0
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.3e-54 217.6 296 49.3
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-53 214.5 288 49.7
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.4e-53 213.4 275 48.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 4.1e-53 212.6 265 47.2
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 9.1e-53 211.5 275 48.0
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.6e-52 209.9 294 50.0
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 5.9e-52 208.8 304 49.0
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.0e-51 208.0 304 47.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.2e-51 206.8 275 48.0
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-50 204.5 300 49.7
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.5e-50 203.4 301 50.5
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 7.2e-50 201.8 246 53.3
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.0e-48 198.0 198 64.1
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.6e-47 193.4 304 44.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.6e-47 193.4 298 46.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 9.7e-47 191.4 267 49.8
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-46 190.7 296 49.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 3.7e-46 189.5 251 53.0
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.8e-46 189.1 255 52.5
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.1e-45 188.0 298 48.7
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.4e-45 187.6 306 47.1
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.8e-45 187.2 298 45.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 5.3e-45 185.7 297 48.1
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.0e-44 183.7 236 50.8
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 4.5e-44 182.6 302 47.4
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.0e-43 181.4 303 41.3
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-43 179.5 297 44.4
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.2e-42 176.4 293 41.0
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.5e-42 175.6 298 41.6
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 9.1e-37 158.3 241 44.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.3e-35 154.5 251 42.6
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.2e-35 153.7 288 36.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 7.2e-34 148.7 267 39.7
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 7.2e-34 148.7 260 41.2
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.7e-33 146.7 301 42.5
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 6.1e-33 145.6 154 58.4
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 6.1e-33 145.6 164 51.8
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 6.1e-33 145.6 259 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 8.8e-32 141.7 323 35.3
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-31 141.4 163 54.0
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.0e-31 140.6 236 40.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 7.2e-26 122.1 280 36.4
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.4e-24 117.9 264 34.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 8.6e-19 98.6 105 54.3
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 4.7e-17 92.8 220 35.5
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 8.0e-17 92.0 148 46.6
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.2e-15 88.2 169 38.5
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 5.8e-15 85.9 77 55.8
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 6.2e-09 65.9 116 34.5
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.1e-08 65.1 93 43.0
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 5.8e-07 59.3 106 39.6
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 5.8e-07 59.3 90 38.9
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 9.8e-07 58.5 118 37.3
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 9.8e-07 58.5 55 52.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 6.4e-06 55.8 67 44.8


User provided reference genes

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