Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 4.3e-305 1050.4 504 100.0
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 9.8e-241 836.6 534 77.0
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.3e-221 772.3 502 75.7
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 4.2e-191 671.8 509 66.2
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 1.0e-189 667.2 517 64.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.6e-187 658.7 512 64.5
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 3.6e-187 658.7 516 63.8
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 1.8e-186 656.4 523 62.7
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 2.0e-185 652.9 519 63.0
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 2.2e-184 649.4 597 58.0
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 1.9e-183 646.4 514 62.3
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 1.9e-183 646.4 511 62.2
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 1.9e-183 646.4 518 62.7
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 5.5e-183 644.8 512 63.5
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.2e-182 643.7 518 62.0
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 4.6e-182 641.7 484 65.1
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 4.6e-182 641.7 519 62.2
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 6.0e-182 641.3 518 62.4
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 6.0e-182 641.3 524 61.6
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 1.3e-181 640.2 521 63.7
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 2.3e-181 639.4 518 62.5
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 3.9e-181 638.6 512 62.5
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 3.3e-180 635.6 521 62.6
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 5.6e-180 634.8 527 61.7
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 1.6e-179 633.3 518 61.4
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 3.7e-179 632.1 511 61.8
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 8.1e-179 630.9 523 61.4
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.4e-178 630.2 523 60.6
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 2.4e-178 629.4 513 61.2
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 3.1e-178 629.0 509 61.9
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.0e-178 628.6 523 60.6
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 9.0e-178 627.5 513 61.6
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 9.0e-178 627.5 529 60.5
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 1.2e-177 627.1 536 60.4
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.6e-177 625.9 523 61.0
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 6.5e-176 621.3 516 62.0
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 1.4e-175 620.2 487 63.2
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 1.9e-175 619.8 512 61.7
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.9e-175 619.8 515 59.6
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 2.5e-175 619.4 513 61.4
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 9.3e-175 617.5 511 60.3
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 2.7e-174 615.9 517 60.5
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 3.5e-174 615.5 517 60.2
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 1.8e-173 613.2 514 59.1
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 3.9e-173 612.1 503 60.6
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 5.1e-173 611.7 520 59.4
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 1.5e-172 610.1 513 58.9
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 5.7e-172 608.2 518 60.0
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 8.2e-171 604.4 513 58.3
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 2.4e-170 602.8 544 56.6
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 3.1e-170 602.4 621 52.7
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 1.2e-169 600.5 513 58.3
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 3.4e-169 599.0 513 59.3
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 4.5e-169 598.6 517 58.8
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 7.6e-169 597.8 513 58.1
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 1.7e-168 596.7 513 57.9
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 7.2e-167 591.3 503 58.4
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 4.6e-166 588.6 492 60.0
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 1.8e-165 586.6 516 57.6
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 8.7e-165 584.3 515 56.7
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 1.3e-163 580.5 450 65.3
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.6e-163 580.1 443 65.5
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 4.8e-163 578.6 525 55.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.1e-162 577.4 477 61.2
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 1.1e-162 577.4 448 64.3
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 3.1e-162 575.9 445 63.6
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 1.2e-161 573.9 497 59.0
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 4.5e-161 572.0 461 63.1
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.0e-160 570.9 441 67.3
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 2.5e-159 566.2 519 55.5
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 9.4e-159 564.3 447 62.6
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 4.6e-158 562.0 492 58.9
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 6.7e-157 558.1 444 63.1
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 2.6e-156 556.2 614 48.2
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 8.2e-155 551.2 566 53.0
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 6.9e-154 548.1 531 55.9
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.3e-152 543.9 373 69.4
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.2e-152 543.1 524 55.0
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 5.0e-152 542.0 416 64.2
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 4.4e-148 528.9 532 52.3
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 8.5e-144 514.6 384 65.1
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.5e-143 513.8 541 49.9
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.4e-138 497.3 371 64.7
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 9.1e-138 494.6 439 58.3
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 4.5e-137 492.3 553 47.2
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 1.3e-136 490.7 458 55.5
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.7e-136 490.3 573 47.5
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.6e-134 483.8 432 57.4
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 6.1e-134 481.9 425 59.5
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 4.4e-132 475.7 377 63.4
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 3.7e-131 472.6 428 57.7
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 2.7e-129 466.5 406 58.6
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 3.2e-127 459.5 509 47.5
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 4.2e-127 459.1 457 53.4
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 1.7e-120 437.2 409 55.7
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 9.5e-119 431.4 406 55.9
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.6e-118 430.6 405 55.6
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 1.4e-117 427.6 533 45.4
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 3.7e-115 419.5 404 54.7
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.3e-107 394.4 379 55.4
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 9.2e-106 388.3 414 49.5
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 1.6e-105 387.5 369 54.2
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 6.2e-94 349.0 270 63.7
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 5.8e-92 342.4 368 49.7
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 4.3e-87 326.2 510 40.0
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 4.2e-82 309.7 249 61.4
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 2.3e-80 303.9 511 36.6
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 8.4e-67 258.8 236 55.9
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 3.2e-66 256.9 590 31.5
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 9.6e-63 245.4 133 82.7
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 4.2e-58 229.9 130 79.2
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 2.8e-54 217.2 260 46.5
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 6.9e-53 212.6 420 35.7
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 2.3e-48 197.6 335 36.1
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 3.0e-48 197.2 157 59.9
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 9.4e-42 175.6 128 61.7
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.6e-39 167.5 88 84.1
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 2.8e-38 164.1 87 85.1
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 6.5e-35 152.9 165 53.9
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 3.0e-32 144.1 88 73.9
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.7e-22 111.7 145 42.8
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 3.7e-22 110.5 108 53.7
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 4.4e-15 87.0 52 73.1
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.0e-11 75.9 51 68.6
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 3.3e-10 70.9 50 62.0
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 4.4e-07 60.5 109 33.9
COL.COLO4_28348 Corchorus olitorius HOM05D002451 ORTHO05D007901 4.9e-06 57.0 37 67.6


User provided reference genes

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