Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.4e-278 962.2 462 100.0
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 5.8e-232 807.4 520 76.2
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.8e-225 785.8 520 73.7
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 7.9e-213 743.8 520 70.0
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.0e-212 743.4 520 70.2
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.5e-211 738.8 486 71.8
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 7.4e-211 737.3 520 68.8
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 6.3e-210 734.2 517 69.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.1e-209 731.9 520 69.0
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.1e-209 731.9 520 68.8
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.5e-208 729.6 520 68.3
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.5e-208 729.6 520 68.5
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.0e-208 729.2 520 68.7
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 7.7e-208 727.2 520 69.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 1.7e-207 726.1 517 69.1
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.9e-207 725.3 518 69.7
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-207 724.9 519 68.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 3.8e-207 724.9 518 68.9
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.5e-207 723.8 519 67.8
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.4e-206 723.0 523 68.3
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.9e-206 722.6 520 68.3
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 3.2e-206 721.8 521 68.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 4.2e-206 721.5 520 66.5
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.2e-206 721.5 518 66.8
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 9.4e-206 720.3 496 69.8
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.6e-205 719.5 523 67.9
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.1e-205 719.2 520 67.1
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.1e-205 719.2 520 67.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.1e-205 719.2 523 67.9
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.7e-205 718.8 523 67.7
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.6e-205 718.4 544 65.1
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 4.6e-205 718.0 520 67.7
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.6e-205 718.0 518 68.1
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.4e-204 716.5 517 67.1
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.4e-204 716.5 520 68.1
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.3e-204 715.7 521 67.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.1e-203 713.4 517 68.5
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.5e-203 713.0 518 67.8
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.5e-203 712.2 520 66.9
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 2.5e-203 712.2 520 66.9
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.5e-203 712.2 518 68.0
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 3.3e-203 711.8 520 66.9
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 9.7e-203 710.3 520 68.8
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 1.3e-202 709.9 520 67.1
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.7e-202 709.5 526 65.2
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.7e-202 709.5 520 67.7
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 3.7e-202 708.4 544 65.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.1e-201 706.8 516 67.6
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 4.1e-201 704.9 519 66.9
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 5.3e-201 704.5 519 66.9
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.9e-201 704.1 520 68.5
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 6.9e-201 704.1 521 66.4
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 9.1e-201 703.7 516 66.7
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.2e-200 703.4 516 67.6
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.0e-200 702.6 520 66.2
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.6e-200 702.2 519 67.8
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 3.4e-200 701.8 511 67.5
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 7.7e-200 700.7 521 65.5
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 7.7e-200 700.7 530 64.2
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.0e-199 700.3 520 66.0
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.0e-199 700.3 517 66.9
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 1.3e-199 699.9 520 65.6
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 2.2e-199 699.1 521 66.0
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 2.9e-199 698.7 521 65.8
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.5e-199 697.2 554 63.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 8.5e-199 697.2 521 65.8
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 8.5e-199 697.2 520 66.0
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.1e-198 696.8 521 65.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.1e-198 696.8 517 66.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 1.9e-198 696.0 518 65.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.9e-198 696.0 520 65.6
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.5e-198 695.7 520 66.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.5e-198 695.7 520 66.0
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 3.2e-198 695.3 521 65.6
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 7.2e-198 694.1 522 65.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.6e-197 693.0 521 65.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.1e-197 692.6 522 65.3
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.7e-197 692.2 520 64.6
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 3.6e-197 691.8 521 64.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 3.6e-197 691.8 520 66.0
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 4.7e-197 691.4 520 66.0
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.3e-196 689.1 530 64.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.1e-195 686.8 520 65.6
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.0e-195 686.0 521 65.5
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.0e-195 686.0 521 65.3
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 9.7e-195 683.7 518 64.5
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 9.7e-195 683.7 518 64.5
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.7e-194 682.9 521 64.1
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.7e-194 682.9 521 64.1
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.8e-194 681.4 521 63.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 4.8e-194 681.4 519 64.5
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 6.3e-194 681.0 501 67.1
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 8.2e-194 680.6 521 63.7
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-193 680.2 524 65.5
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 1.1e-193 680.2 521 64.1
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.4e-193 679.9 521 63.7
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 1.4e-193 679.9 521 63.7
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.8e-193 679.5 514 63.8
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 5.3e-193 677.9 520 63.8
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 7.0e-193 677.6 520 63.8
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 2.0e-192 676.0 520 63.8
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 2.0e-192 676.0 520 63.8
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 7.7e-192 674.1 520 63.7
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-191 672.2 521 63.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.8e-191 671.8 525 64.4
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 4.2e-190 668.3 522 63.4
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 9.4e-190 667.2 494 64.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-189 666.4 466 69.5
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 3.6e-189 665.2 521 63.5
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.6e-189 665.2 472 69.5
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.7e-189 664.8 516 64.3
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 4.7e-189 664.8 494 66.8
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 6.1e-189 664.5 466 69.1
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.1e-189 664.5 515 64.7
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 6.1e-189 664.5 521 63.9
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 6.7e-188 661.0 522 63.6
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.1e-185 652.1 516 62.4
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 7.0e-185 651.0 516 62.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 9.1e-185 650.6 464 68.3
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.2e-184 650.2 520 63.8
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.7e-184 649.0 518 63.3
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.5e-184 648.7 516 62.8
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.9e-183 645.6 469 67.4
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 5.0e-183 644.8 553 60.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.5e-182 643.3 521 62.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-181 640.2 520 62.1
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.2e-181 640.2 470 65.3
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 2.1e-181 639.4 550 60.4
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 3.0e-180 635.6 523 60.4
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.0e-180 635.6 523 61.4
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.4e-179 631.7 523 61.0
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.3e-178 630.2 476 65.1
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.2e-176 623.6 467 66.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.9e-176 621.3 573 56.5
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.8e-175 618.6 490 63.1
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.7e-170 603.2 521 59.5
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.7e-170 603.2 561 57.2
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 9.2e-169 597.4 542 56.8
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.5e-166 590.1 520 58.3
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 2.0e-163 579.7 357 76.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.4e-161 573.5 521 57.8
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 7.3e-158 561.2 502 59.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 8.1e-149 531.2 544 51.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 9.8e-147 524.2 479 56.8
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.1e-145 520.8 460 59.8
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 8.1e-141 504.6 377 66.0
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 6.8e-140 501.5 380 66.1
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 9.6e-134 481.1 454 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 4.2e-129 465.7 490 50.0
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 2.6e-123 446.4 293 72.4
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.6e-123 446.4 288 73.6
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.2e-122 443.4 473 49.5
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.9e-121 440.3 266 74.8
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 3.2e-121 439.5 289 73.0
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.2e-114 416.8 469 47.1
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.2e-99 367.9 352 55.1
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.1e-92 344.7 244 69.7
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.1e-88 330.5 300 57.7
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 9.1e-84 315.1 291 57.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.7e-67 260.4 250 53.2
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 4.0e-39 166.8 144 55.6
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-37 161.8 204 45.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 8.3e-37 159.1 324 31.5
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.3e-34 151.8 102 67.6
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.6e-33 146.4 203 43.8
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 6.2e-32 142.9 400 27.0
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.2e-27 128.6 86 70.9
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-18 98.6 144 45.1
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.5e-17 95.1 149 37.6
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.5e-17 94.4 53 79.2


User provided reference genes

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