Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 2.9e-48 194.9 99 100.0
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 4.5e-33 144.4 72 100.0
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 2.3e-32 142.1 88 80.7
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 6.1e-30 134.0 88 80.7
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.0e-29 133.3 88 80.7
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 7.0e-18 94.0 93 51.6
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 3.5e-17 91.7 90 56.7
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.0e-16 90.1 94 53.2
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.3e-16 89.7 94 54.3
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 2.3e-16 89.0 96 52.1
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 4.3e-15 84.7 90 53.3
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 5.6e-15 84.3 94 51.1
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 7.3e-15 84.0 100 50.0
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 7.3e-15 84.0 77 61.0
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 7.3e-15 84.0 77 61.0
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 9.5e-15 83.6 91 50.5
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 9.5e-15 83.6 94 51.1
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 2.1e-14 82.4 90 52.2
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 2.8e-14 82.0 98 49.0
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 4.7e-14 81.3 45 80.0
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 6.2e-14 80.9 67 59.7
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 6.2e-14 80.9 95 48.4
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 6.2e-14 80.9 45 75.6
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 6.2e-14 80.9 90 50.0
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 8.1e-14 80.5 45 77.8
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 8.1e-14 80.5 96 49.0
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.1e-13 80.1 94 50.0
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.1e-13 80.1 91 49.5
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 1.1e-13 80.1 92 51.1
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 4.0e-13 78.2 100 46.0
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 5.2e-13 77.8 103 46.6
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 6.8e-13 77.4 90 48.9
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 8.9e-13 77.0 83 54.2
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.2e-12 76.6 78 52.6
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 3.4e-12 75.1 87 49.4
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.4e-12 75.1 45 73.3
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 7.5e-12 73.9 90 50.0
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 9.9e-12 73.6 100 48.0
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.7e-11 72.8 93 44.1
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 2.2e-11 72.4 43 69.8
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 2.2e-11 72.4 98 46.9
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 3.7e-11 71.6 98 44.9
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 6.4e-11 70.9 74 51.4
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 6.4e-11 70.9 74 51.4
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 8.3e-11 70.5 86 44.2
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-10 69.7 59 55.9
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-10 69.7 59 55.9
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 1.4e-10 69.7 98 44.9
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 1.9e-10 69.3 45 62.2
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.4e-10 68.9 74 48.6
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 2.4e-10 68.9 44 68.2
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 2.7e-09 65.5 76 47.4
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 2.7e-09 65.5 89 43.8
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 4.6e-09 64.7 44 54.5
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 7.8e-09 63.9 99 41.4
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 2.3e-08 62.4 65 46.2
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 3.9e-08 61.6 98 39.8
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 1.9e-07 59.3 47 51.1
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.9e-07 59.3 75 42.7
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 2.5e-07 58.9 85 41.2
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 7.3e-07 57.4 81 49.4
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 2.8e-06 55.5 82 35.4
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 2.8e-06 55.5 42 52.4
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 3.6e-06 55.1 69 40.6
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 3.6e-06 55.1 37 59.5
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 3.6e-06 55.1 37 59.5
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 3.6e-06 55.1 42 52.4
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 4.7e-06 54.7 96 35.4
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 8.1e-06 53.9 82 40.2


User provided reference genes

Program Settings