Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.0e-124 450.7 333 100.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.7e-87 327.0 303 80.5
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.5e-84 315.1 334 62.9
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 8.5e-84 314.7 320 71.9
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.9e-83 313.5 333 76.9
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.1e-82 310.1 309 83.5
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.7e-82 309.7 329 76.6
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.4e-81 307.4 312 82.1
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.8e-81 307.0 312 82.4
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 5.2e-81 305.4 324 75.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.2e-80 304.3 332 70.5
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 7.5e-80 301.6 316 69.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.3e-79 300.8 312 81.1
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 2.2e-79 300.1 319 78.4
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.8e-79 299.7 316 78.2
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.8e-79 299.7 336 68.5
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.8e-79 298.9 318 78.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.8e-79 298.9 318 78.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.8e-79 298.9 319 77.4
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 4.8e-79 298.9 318 80.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.8e-79 298.9 334 75.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 6.3e-79 298.5 320 73.1
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 8.3e-79 298.1 329 75.4
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 8.3e-79 298.1 321 73.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.4e-78 297.4 318 70.1
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.4e-78 296.6 318 77.4
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.1e-78 296.2 331 69.2
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.1e-78 296.2 319 72.4
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.1e-78 296.2 319 70.8
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 3.1e-78 296.2 319 63.6
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-78 295.4 319 77.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 7.0e-78 295.0 336 75.0
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.1e-78 294.7 314 76.4
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.2e-77 294.3 323 78.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.7e-77 293.1 335 66.3
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.7e-77 293.1 333 68.8
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.5e-77 292.7 319 78.7
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 4.5e-77 292.4 335 70.4
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 5.9e-77 292.0 331 69.5
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 5.9e-77 292.0 329 75.1
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 5.9e-77 292.0 331 68.0
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.9e-77 292.0 314 74.8
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 7.7e-77 291.6 316 77.8
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.0e-76 291.2 318 69.2
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.0e-76 291.2 328 68.3
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.0e-76 291.2 318 63.8
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.0e-76 291.2 333 68.5
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 2.3e-76 290.0 331 67.7
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.3e-76 290.0 311 78.8
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 3.8e-76 289.3 312 68.9
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-76 288.9 331 67.7
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 5.0e-76 288.9 331 67.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 6.6e-76 288.5 328 76.2
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 6.6e-76 288.5 318 73.6
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 8.6e-76 288.1 318 75.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 8.6e-76 288.1 321 76.0
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.5e-75 287.3 329 74.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.5e-75 287.3 333 67.0
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.5e-75 287.3 333 67.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.5e-75 287.3 318 74.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 3.3e-75 286.2 310 76.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.3e-75 286.2 331 67.7
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 7.2e-75 285.0 325 72.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 9.5e-75 284.6 318 68.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.2e-74 284.3 330 70.3
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.6e-74 283.9 355 56.9
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-74 283.5 318 69.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-74 283.5 318 74.2
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.1e-74 283.5 318 74.2
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.8e-74 283.1 327 67.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 4.7e-74 282.3 319 69.0
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 8.0e-74 281.6 331 66.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 8.0e-74 281.6 331 66.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 8.0e-74 281.6 324 65.1
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.0e-73 281.2 318 73.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.8e-73 280.4 334 71.3
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 3.0e-73 279.6 335 74.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 6.8e-73 278.5 318 67.3
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 6.8e-73 278.5 333 67.6
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 8.9e-73 278.1 318 75.8
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.0e-72 276.9 328 67.1
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.6e-72 276.6 324 67.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 3.4e-72 276.2 292 80.5
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.3e-71 274.2 326 64.7
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.8e-70 270.4 318 69.8
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 7.0e-70 268.5 323 67.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.7e-69 266.5 319 61.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.5e-69 266.2 314 70.7
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 4.5e-69 265.8 316 73.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 5.9e-69 265.4 292 81.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 7.8e-69 265.0 291 80.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-68 264.6 285 83.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.3e-68 263.5 318 73.6
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 8.6e-68 261.5 318 68.6
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.6e-66 257.3 313 74.1
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.6e-66 257.3 291 80.8
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.8e-66 256.5 317 60.9
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.8e-66 256.5 317 60.9
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 8.0e-66 255.0 293 79.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.3e-65 253.4 327 64.5
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.3e-65 253.4 291 72.9
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.0e-64 250.4 327 65.1
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 4.4e-64 249.2 325 72.3
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 3.2e-62 243.0 305 65.2
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 5.4e-62 242.3 251 66.9
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.0e-60 238.0 304 69.7
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 6.6e-60 235.3 235 67.7
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.9e-59 233.8 311 56.9
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.5e-59 231.5 319 59.9
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.2e-58 228.8 309 66.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 9.8e-56 221.5 356 49.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-55 220.7 217 79.7
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-55 220.7 216 67.6
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-54 216.9 217 61.8
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.1e-53 213.8 146 78.8
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 6.6e-52 208.8 319 55.5
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.8e-50 203.4 294 55.8
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-50 203.0 174 73.0
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 8.1e-50 201.8 208 63.5
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 8.1e-50 201.8 324 60.2
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.8e-49 200.7 315 61.6
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.8e-49 198.7 174 61.5
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 8.9e-49 198.4 174 61.5
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.4e-46 189.1 174 67.8
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.2e-45 188.0 287 60.3
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.0e-44 184.9 307 64.5
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.9e-43 180.6 320 56.6
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 7.3e-43 178.7 183 77.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.6e-42 176.4 154 64.3
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 6.2e-42 175.6 146 65.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-41 174.9 134 70.9
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.4e-41 174.5 307 50.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 6.8e-41 172.2 212 86.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-40 170.2 185 60.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.6e-40 170.2 122 75.4
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.2e-39 167.2 185 64.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 6.0e-37 159.1 219 53.0
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.3e-36 157.9 307 58.0
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 6.6e-36 155.6 148 59.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.1e-35 154.8 315 47.9
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-35 153.7 147 59.2
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.1e-34 150.6 317 44.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 4.0e-33 146.4 152 62.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.3e-33 146.0 156 60.9
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.7e-31 141.0 153 56.9
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.2e-30 136.3 207 74.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-29 133.3 157 61.1
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 3.9e-28 129.8 151 68.2
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.9e-28 129.8 151 55.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.2e-21 108.2 146 45.2
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.6e-21 107.8 183 69.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-19 98.6 85 63.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-18 96.7 85 62.4
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-18 96.7 85 62.4
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-15 87.8 78 61.5
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.2e-14 83.2 96 45.8
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.7e-13 80.5 81 56.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.0e-13 79.3 85 55.3
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.0e-12 78.6 67 65.7
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-11 73.9 96 39.6
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-09 67.4 102 37.3
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 2.2e-07 60.8 78 53.8
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 2.9e-07 60.5 61 55.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 6.5e-07 59.3 96 42.7
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.2e-06 56.6 62 53.2


User provided reference genes

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