Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 0.0e+00 1120.5 554 100.0
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.0e-270 936.4 575 81.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 6.9e-264 913.7 633 74.2
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 8.2e-257 890.2 575 77.9
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.4e-248 862.8 577 74.4
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 5.3e-240 834.3 561 72.0
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 2.6e-239 832.0 563 73.0
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 5.9e-239 830.9 561 72.2
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.7e-238 829.3 568 72.0
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 2.2e-238 828.9 561 71.8
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 3.8e-238 828.2 569 70.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 5.5e-237 824.3 573 71.6
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 8.0e-236 820.5 562 71.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 5.2e-235 817.8 578 69.9
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 6.7e-235 817.4 569 71.4
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 1.2e-234 816.6 562 71.5
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.5e-234 816.2 560 72.3
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.6e-234 815.5 561 71.1
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 3.3e-234 815.1 569 71.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 4.4e-234 814.7 562 71.2
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 7.5e-234 813.9 567 71.3
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 3.7e-233 811.6 570 70.9
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.1e-232 810.1 562 71.4
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.4e-232 809.7 562 71.0
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.1e-232 808.5 567 69.5
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 4.1e-232 808.1 569 70.3
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.0e-231 805.8 562 70.6
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.7e-231 805.4 569 69.2
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.7e-231 805.4 562 70.3
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 3.5e-231 805.1 569 69.2
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 3.5e-231 805.1 569 69.2
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 3.5e-231 805.1 567 71.1
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 4.5e-231 804.7 569 70.3
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.2e-230 802.4 555 71.0
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 2.9e-230 802.0 565 69.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 6.5e-230 800.8 559 69.9
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-229 799.7 568 70.6
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-229 799.7 568 70.6
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.5e-229 798.9 567 70.7
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 7.2e-229 797.3 568 70.4
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.1e-228 795.8 562 70.8
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 5.2e-227 791.2 559 69.6
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.2e-226 790.0 563 68.4
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.2e-226 790.0 565 68.8
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.5e-226 789.6 566 68.0
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.4e-226 788.5 567 70.0
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 7.5e-226 787.3 588 67.9
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 2.2e-225 785.8 560 70.7
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 2.8e-225 785.4 574 66.9
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 6.3e-225 784.3 577 67.2
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 2.4e-224 782.3 572 68.2
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 5.4e-224 781.2 560 68.8
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 3.5e-223 778.5 567 68.6
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 7.7e-223 777.3 562 70.1
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 2.9e-222 775.4 573 67.0
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 2.9e-222 775.4 563 67.5
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 3.8e-222 775.0 572 67.1
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.9e-221 772.7 585 67.5
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 3.3e-221 771.9 569 68.7
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 7.2e-221 770.8 603 65.3
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 9.5e-221 770.4 574 66.6
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.8e-220 768.8 565 66.9
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.5e-218 763.1 591 64.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 2.0e-218 762.7 557 69.3
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 8.3e-217 757.3 563 66.6
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 1.1e-216 756.9 565 66.5
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 5.4e-216 754.6 562 66.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 7.0e-216 754.2 564 66.1
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 9.2e-216 753.8 563 66.1
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.0e-215 752.7 565 66.2
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 3.5e-215 751.9 563 66.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 5.9e-215 751.1 560 67.1
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 7.8e-215 750.7 565 66.2
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.3e-214 749.2 577 64.8
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 3.3e-213 745.3 559 66.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 5.6e-213 744.6 550 68.2
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 7.3e-213 744.2 571 66.2
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.7e-209 731.9 564 66.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 6.2e-196 688.0 557 63.7
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.8e-195 686.4 583 60.7
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 5.4e-192 674.9 567 61.6
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.0e-190 670.6 644 55.4
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.2e-188 663.7 461 70.1
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 5.4e-184 648.3 457 68.7
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.0e-174 617.5 399 73.9
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.4e-171 606.3 457 65.6
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 3.5e-167 592.4 400 71.2
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.3e-166 590.5 412 69.2
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.6e-165 585.1 427 67.9
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.1e-163 580.9 619 51.9
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.4e-160 570.5 615 50.6
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.4e-160 570.5 615 50.6
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 1.8e-158 563.5 408 67.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.5e-157 560.5 449 63.5
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 4.3e-157 558.9 551 55.2
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 4.0e-155 552.4 394 68.8
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.4e-149 531.6 398 67.1
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 9.7e-149 531.2 519 54.1
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 8.5e-145 518.1 305 79.3
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 4.2e-144 515.8 407 64.4
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.4e-133 479.2 305 75.4
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 1.2e-122 444.5 314 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.7e-116 422.9 551 44.1
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 4.8e-108 396.0 656 37.7
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 7.3e-88 328.9 238 71.0
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.9e-76 290.4 538 37.0
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.6e-71 274.6 200 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.7e-65 254.6 392 39.0
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 4.9e-60 236.5 154 77.3
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.1e-59 235.3 144 76.4
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.3e-57 228.4 136 77.9
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 9.6e-56 222.2 132 75.8
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 6.2e-55 219.5 123 82.1
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 2.4e-46 191.0 101 87.1
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.0e-41 174.1 111 77.5
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.8e-38 164.9 145 60.0
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.1e-34 151.4 156 52.6
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 5.0e-12 77.0 174 29.3
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 3.6e-10 70.9 67 55.2
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 6.7e-09 66.6 36 75.0
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 3.1e-06 57.8 90 33.3
PGR119G0667 Punica granatum HOM05D000563 ORTHO05D000536 3.1e-06 57.8 94 37.2
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 3.1e-06 57.8 99 34.3
BcaC04g18629 Brassica carinata HOM05D000563 ORTHO05D000536 4.1e-06 57.4 97 39.2
COL.COLO4_21627 Corchorus olitorius HOM05D000563 ORTHO05D000536 5.3e-06 57.0 93 37.6
BcaB08g36629 Brassica carinata HOM05D000563 ORTHO05D000536 7.0e-06 56.6 95 38.9
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 7.0e-06 56.6 68 42.6
Atru.chr5.1354 Acer truncatum HOM05D000563 ORTHO05D000536 9.1e-06 56.2 94 37.2
BcaB01g05286 Brassica carinata HOM05D000563 ORTHO05D000536 9.1e-06 56.2 95 40.0
C03p10780 Brassica napus HOM05D000563 ORTHO05D000536 9.1e-06 56.2 95 40.0
QL06p005850 Quercus lobata HOM05D000563 ORTHO05D000536 9.1e-06 56.2 92 37.0
Thecc.04G219600 Theobroma cacao HOM05D000563 ORTHO05D000536 9.1e-06 56.2 95 37.9


User provided reference genes

Program Settings