Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.8e-279 965.3 495 100.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 2.5e-225 785.4 498 83.3
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.9e-213 745.3 504 78.6
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 7.7e-206 720.7 461 81.3
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 4.2e-204 714.9 497 74.0
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 5.3e-199 698.0 512 72.7
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 1.7e-197 693.0 502 72.7
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.7e-195 684.9 514 71.6
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 6.1e-195 684.5 512 71.7
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 5.2e-194 681.4 503 71.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 8.8e-194 680.6 513 71.9
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 8.8e-194 680.6 510 72.4
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.2e-193 680.2 515 71.8
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 1.2e-193 680.2 510 70.6
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 2.0e-193 679.5 512 71.5
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.0e-193 679.5 510 70.6
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.6e-193 679.1 512 71.1
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 5.7e-193 677.9 506 71.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 7.5e-193 677.6 513 72.1
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.3e-192 676.8 509 70.5
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 4.8e-192 674.9 510 73.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.1e-191 673.7 504 71.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.1e-191 672.2 515 70.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 1.6e-190 669.8 514 71.2
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.0e-189 667.2 503 70.2
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.9e-189 665.6 509 70.3
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 2.9e-189 665.6 513 69.2
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.5e-188 662.5 514 67.7
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 3.2e-188 662.1 508 69.7
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 5.5e-188 661.4 504 71.4
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 9.4e-188 660.6 507 70.4
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.2e-187 660.2 506 69.8
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.6e-187 658.7 510 68.6
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.6e-187 658.7 504 70.0
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.0e-186 657.1 504 70.6
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.0e-186 657.1 498 69.9
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.8e-186 656.4 515 69.1
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 3.0e-186 655.6 507 69.6
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 5.2e-186 654.8 503 68.6
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 5.7e-185 651.4 505 71.3
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 5.7e-185 651.4 516 68.4
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 7.5e-185 651.0 518 67.6
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 2.2e-184 649.4 509 67.8
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.2e-184 649.4 503 68.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 1.1e-183 647.1 511 68.1
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.1e-183 647.1 501 68.9
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.7e-182 642.5 536 67.7
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 2.7e-182 642.5 501 68.9
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.7e-182 642.5 508 67.3
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.0e-181 640.6 505 70.3
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-181 640.2 508 70.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.3e-181 639.4 502 70.1
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.3e-181 639.4 505 70.3
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.9e-181 639.0 511 68.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 5.0e-181 638.3 506 67.8
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 5.0e-181 638.3 510 68.0
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.5e-181 637.9 505 70.3
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 8.6e-181 637.5 501 68.1
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.5e-180 636.7 515 65.6
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.9e-180 636.3 521 68.3
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.9e-180 636.3 504 67.5
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.9e-180 636.3 524 66.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 5.5e-180 634.8 514 66.3
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.5e-180 634.8 505 68.3
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 7.2e-180 634.4 505 69.3
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.2e-179 633.6 521 66.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 8.0e-179 630.9 511 66.5
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.0e-179 630.9 513 67.3
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.0e-178 630.6 510 67.3
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.4e-178 630.2 503 68.4
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.8e-178 629.8 506 66.2
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.2e-178 628.2 520 66.5
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.4e-177 625.5 505 66.3
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 4.4e-177 625.2 508 65.7
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 4.4e-177 625.2 502 65.7
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 9.8e-177 624.0 524 65.8
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 3.7e-176 622.1 507 67.1
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 6.3e-176 621.3 514 66.3
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.4e-175 620.2 515 64.7
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.8e-175 619.8 506 65.8
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.4e-175 618.2 500 68.2
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 5.4e-175 618.2 514 64.6
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.2e-174 617.1 513 65.1
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.0e-174 616.3 509 65.2
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.3e-173 613.6 509 66.2
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 3.8e-173 612.1 506 65.0
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 7.3e-172 607.8 518 65.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 9.5e-172 607.4 518 64.5
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 8.0e-171 604.4 498 66.1
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 8.0e-171 604.4 505 65.3
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.4e-170 603.6 502 65.3
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 8.9e-170 600.9 506 64.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.5e-169 600.1 500 65.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 7.5e-169 597.8 498 66.1
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.2e-168 596.3 497 65.8
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 4.9e-168 595.1 497 65.6
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 9.2e-167 590.9 502 64.5
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.7e-165 586.6 512 63.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 8.9e-162 574.3 461 66.2
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.7e-160 570.1 521 61.6
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.9e-160 569.3 528 61.0
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.6e-157 557.8 528 59.8
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.1e-151 540.8 451 64.5
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.9e-151 540.0 516 59.5
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 3.0e-149 532.7 502 62.0
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.5e-140 503.8 509 57.0
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 2.5e-140 503.1 509 57.4
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.3e-140 502.3 509 57.6
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 8.4e-136 488.0 532 54.5
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 7.3e-132 474.9 503 56.5
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.6e-124 448.7 501 54.7
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 3.1e-122 443.0 501 55.1
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 8.4e-120 434.9 305 71.8
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 5.5e-119 432.2 530 50.4
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 8.7e-117 424.9 543 49.2
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.6e-110 402.5 506 47.6
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.5e-103 379.0 494 49.4
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 2.0e-92 344.0 288 67.4
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 7.2e-87 325.5 582 39.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 6.1e-62 242.7 281 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.8e-53 214.5 334 43.1
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.2e-51 207.6 202 60.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 7.3e-39 166.0 275 41.1
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.7e-24 118.2 99 66.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.6e-23 112.5 85 65.9
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 3.6e-22 110.5 477 26.2
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.5e-20 105.1 521 26.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.2e-18 97.4 70 72.9
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 7.3e-15 86.3 57 68.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 4.8e-14 83.6 64 64.1
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-13 82.4 54 68.5
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.9e-10 71.6 188 31.4
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-08 65.5 69 56.5


User provided reference genes

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