Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082270 Amaranthus hybridus HOM05D003121 ORTHO05D003535 1.2e-33 146.0 76 100.0
Ah.01g023230 Amaranthus hybridus HOM05D003121 ORTHO05D003535 9.8e-28 126.3 75 92.0
AUR62010012 Chenopodium quinoa HOM05D003121 ORTHO05D003535 9.9e-20 99.8 75 69.3
AUR62013002 Chenopodium quinoa HOM05D003121 ORTHO05D003535 9.9e-20 99.8 75 69.3
AUR62015153 Chenopodium quinoa HOM05D003121 ORTHO05D003535 9.9e-20 99.8 75 69.3
EL10Ac6g13967 Beta vulgaris HOM05D003121 ORTHO05D003535 7.1e-18 93.6 75 66.7
EL10Ac9g21341 Beta vulgaris HOM05D003121 ORTHO05D003535 6.0e-17 90.5 75 65.3
Hund00013 Selenicereus undatus HOM05D003121 ORTHO05D003535 8.1e-14 80.1 76 56.6
TAR376G0768 Trochodendron aralioides HOM05D003121 ORTHO05D003535 2.4e-13 78.6 75 60.0
TAR625G0403 Trochodendron aralioides HOM05D003121 ORTHO05D003535 5.8e-12 73.9 75 57.3
Migut.N01332 Erythranthe guttata HOM05D003121 ORTHO05D003535 9.9e-12 73.2 75 54.7
Sc14g0002330 Simmondsia chinensis HOM05D003121 ORTHO05D003535 1.7e-11 72.4 75 57.3
MSTRG.27630 Avicennia marina HOM05D003121 ORTHO05D003535 2.9e-11 71.6 75 54.7
Manes.15G059200 Manihot esculenta HOM05D003121 ORTHO05D003535 3.8e-11 71.2 75 50.7
Cc09_g10310 Coffea canephora HOM05D003121 ORTHO05D003535 4.9e-11 70.9 75 54.7
Eucgr.G01791 Eucalyptus grandis HOM05D003121 ORTHO05D003535 4.9e-11 70.9 75 53.3
Lsat_1_v5_gn_4_72000 Lactuca sativa HOM05D003121 ORTHO05D003535 4.9e-11 70.9 76 51.3
GSVIVG01037045001 Vitis vinifera HOM05D003121 ORTHO05D003535 6.4e-11 70.5 75 54.7
Carub.0006s2137 Capsella rubella HOM05D003121 ORTHO05D003535 8.4e-11 70.1 75 54.7
PGR042G3155 Punica granatum HOM05D003121 ORTHO05D003535 8.4e-11 70.1 75 53.3
Ciclev10030221m.g Citrus clementina HOM05D003121 ORTHO05D003535 1.1e-10 69.7 75 54.7
Lj5P177T42 Lonicera japonica HOM05D003121 ORTHO05D003535 1.1e-10 69.7 75 54.7
Psat6g232680 Pisum sativum HOM05D003121 ORTHO05D003535 1.1e-10 69.7 75 50.7
AT5G23590 Arabidopsis thaliana HOM05D003121 ORTHO05D003535 1.4e-10 69.3 75 53.3
CDE02G2638 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 1.4e-10 69.3 75 52.0
Dinv41919 Davidia involucrata HOM05D003121 ORTHO05D003535 1.4e-10 69.3 75 53.3
PGSC0003DMG401001724 Solanum tuberosum HOM05D003121 ORTHO05D003535 1.4e-10 69.3 75 54.7
THA.LOC104819658 Tarenaya hassleriana HOM05D003121 ORTHO05D003535 1.4e-10 69.3 75 54.7
arahy.Tifrunner.gnm1.ann1.LP37DI Arachis hypogaea HOM05D003121 ORTHO05D003535 1.9e-10 68.9 75 52.0
arahy.Tifrunner.gnm1.ann1.TJ1SRC Arachis hypogaea HOM05D003121 ORTHO05D003535 1.9e-10 68.9 75 52.0
CSS0021302 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 1.9e-10 68.9 75 53.3
MBI15_g18375_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 1.9e-10 68.9 75 53.3
Nn5g27768 Nelumbo nucifera HOM05D003121 ORTHO05D003535 1.9e-10 68.9 75 53.3
AL6G34890 Arabidopsis lyrata HOM05D003121 ORTHO05D003535 2.4e-10 68.6 75 53.3
Gohir.A01G170400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 2.4e-10 68.6 75 54.7
SGA_v2.0_scaffold195G40810 Striga asiatica HOM05D003121 ORTHO05D003535 2.4e-10 68.6 75 53.3
Ca_03297_v3 Cicer arietinum L. HOM05D003121 ORTHO05D003535 3.2e-10 68.2 75 50.7
Hma1.2p1_0032F.1_g019220 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 3.2e-10 68.2 75 52.0
Gorai.002G200100 Gossypium raimondii HOM05D003121 ORTHO05D003535 4.1e-10 67.8 75 54.7
Solyc01g088730.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 4.1e-10 67.8 75 53.3
Sopen01g035570 Solanum pennellii HOM05D003121 ORTHO05D003535 4.1e-10 67.8 75 53.3
C07p43950 Brassica napus HOM05D003121 ORTHO05D003535 9.2e-10 66.6 77 51.9
BolC7t44923H Brassica oleracea HOM05D003121 ORTHO05D003535 9.2e-10 66.6 77 51.9
Gohir.D01G161400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 9.2e-10 66.6 75 53.3
QL11p052350 Quercus lobata HOM05D003121 ORTHO05D003535 9.2e-10 66.6 79 51.9
CARHR189980 Cardamine hirsuta HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 52.0
ClCG02G003910 Citrullus lanatus HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 49.3
MELO3C013333.2 Cucumis melo HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 49.3
CsaV3_7G001220 Cucumis sativus L. HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 49.3
Nitab4.5_0000563g0090 Nicotiana tabacum HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 52.0
Sp2g23600 Schrenkiella parvula HOM05D003121 ORTHO05D003535 1.2e-09 66.2 76 53.9
Sed0021457 Sechium edule HOM05D003121 ORTHO05D003535 1.2e-09 66.2 75 48.0
Actinidia39167 Actinidia chinensis HOM05D003121 ORTHO05D003535 1.6e-09 65.9 75 52.0
Rhsim01G0025300 Rhododendron simsii HOM05D003121 ORTHO05D003535 1.6e-09 65.9 75 49.3
Thecc.02G055800 Theobroma cacao HOM05D003121 ORTHO05D003535 2.1e-09 65.5 75 53.3
DCAR_022799 Daucus carota HOM05D003121 ORTHO05D003535 2.7e-09 65.1 75 50.7
Duzib052G0361 Durio zibethinus HOM05D003121 ORTHO05D003535 3.5e-09 64.7 75 52.0
Thhalv10004704m.g Eutrema salsugineum HOM05D003121 ORTHO05D003535 3.5e-09 64.7 76 52.6
Sed0012540 Sechium edule HOM05D003121 ORTHO05D003535 3.5e-09 64.7 75 49.3
SGA_v2.0_scaffold207G41938 Striga asiatica HOM05D003121 ORTHO05D003535 3.5e-09 64.7 63 58.7
Nitab4.5_0002341g0030 Nicotiana tabacum HOM05D003121 ORTHO05D003535 4.6e-09 64.3 75 50.7
PSO541G2003 Papaver somniferum HOM05D003121 ORTHO05D003535 4.6e-09 64.3 69 50.7
PSO675G0341 Papaver somniferum HOM05D003121 ORTHO05D003535 4.6e-09 64.3 69 50.7
CDE09G1210 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 6.0e-09 63.9 75 49.3
BraA06t26383Z Brassica rapa HOM05D003121 ORTHO05D003535 7.8e-09 63.5 76 48.7
DCAR_020880 Daucus carota HOM05D003121 ORTHO05D003535 7.8e-09 63.5 75 50.7
Lsat_1_v5_gn_4_71980 Lactuca sativa HOM05D003121 ORTHO05D003535 1.3e-08 62.8 76 50.0
Medtr1g112910 Medicago truncatula HOM05D003121 ORTHO05D003535 1.3e-08 62.8 75 48.0
RcHm_v2.0_Chr6g0278841 Rosa chinensis HOM05D003121 ORTHO05D003535 1.3e-08 62.8 75 48.0
Aa31LG10G14410 Aethionema arabicum HOM05D003121 ORTHO05D003535 1.7e-08 62.4 75 49.3
FAN20G1288 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.7e-08 62.4 75 48.0
Hma1.2p1_0163F.1_g072700 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 1.7e-08 62.4 75 50.7
FvH4_2g15640 Fragaria vesca HOM05D003121 ORTHO05D003535 2.3e-08 62.0 75 48.0
FAN24G0024 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.3e-08 62.0 75 48.0
Prupe.8G168900 Prunus persica HOM05D003121 ORTHO05D003535 2.3e-08 62.0 75 50.7
COL.COLO4_32987 Corchorus olitorius HOM05D003121 ORTHO05D003535 3.0e-08 61.6 68 52.9
Peaxi162Scf00793g00345 Petunia axillaris HOM05D003121 ORTHO05D003535 3.0e-08 61.6 75 50.7
vmacro13056 Vaccinium macrocarpon HOM05D003121 ORTHO05D003535 3.0e-08 61.6 75 49.3
COL.COLO4_17374 Corchorus olitorius HOM05D003121 ORTHO05D003535 3.9e-08 61.2 63 55.6
CAN.G756.31 Capsicum annuum HOM05D003121 ORTHO05D003535 6.6e-08 60.5 75 50.7
unitig_746.g26872 Utricularia gibba HOM05D003121 ORTHO05D003535 6.6e-08 60.5 68 52.9
VMungo0720G1452 Vigna mungo HOM05D003121 ORTHO05D003535 8.7e-08 60.1 75 46.7
PSO675G3506 Papaver somniferum HOM05D003121 ORTHO05D003535 1.5e-07 59.3 65 55.4
TWI60G0855 Tripterygium wilfordii HOM05D003121 ORTHO05D003535 1.5e-07 59.3 75 49.3
A06p34540 Brassica napus HOM05D000059 ORTHO05D003535 3.3e-07 58.2 77 46.8
CiPaw.01G132000 Carya illinoinensis HOM05D003121 ORTHO05D003535 3.3e-07 58.2 79 51.9
Eucgr.L03152 Eucalyptus grandis HOM05D003121 ORTHO05D003535 3.3e-07 58.2 68 51.5
HanXRQChr10g0298091 Helianthus annuus HOM05D003121 ORTHO05D003535 3.3e-07 58.2 76 44.7
TPR.G2486 Trifolium pratense HOM05D003121 ORTHO05D003535 3.3e-07 58.2 79 44.3
MD05G1124900 Malus domestica HOM05D003121 ORTHO05D003535 9.6e-07 56.6 76 48.7
SHI04584 Sapria himalayana HOM05D003121 ORTHO05D003535 9.6e-07 56.6 73 49.3
Sabra09G0107000 Salix brachista HOM05D003121 ORTHO05D003535 1.2e-06 56.2 68 51.5
Actinidia32029 Actinidia chinensis HOM05D003121 ORTHO05D003535 1.6e-06 55.8 75 46.7
Potri.009G138100 Populus trichocarpa HOM05D003121 ORTHO05D003535 2.1e-06 55.5 69 47.8
FAN13G2513 Fragaria x ananassa HOM05D003121 ORTHO05D003535 8.1e-06 53.5 51 56.9


User provided reference genes

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