Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.3e-142 509.6 612 100.0
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.7e-82 311.2 613 83.7
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.3e-73 279.3 614 80.6
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 5.2e-71 273.1 613 80.1
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 4.4e-62 243.4 592 81.8
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.5e-54 218.4 248 71.8
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 8.4e-45 186.0 226 79.6
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.1e-43 181.4 233 67.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-30 137.9 226 61.5
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 8.5e-29 132.9 238 56.3
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 7.2e-28 129.8 251 56.6
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 6.1e-27 126.7 67 85.1
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 1.4e-26 125.6 224 67.0
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.3e-26 124.8 210 60.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.3e-24 119.0 223 61.4
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.8e-24 117.9 211 33.2
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 6.3e-24 116.7 224 58.5
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 8.2e-24 116.3 231 55.4
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.2e-24 116.3 213 32.9
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.1e-23 115.9 248 35.9
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.1e-23 115.9 230 62.2
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.1e-23 115.9 213 56.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.4e-23 115.5 189 68.8
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.8e-23 115.2 201 62.2
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.4e-23 114.8 224 62.1
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 4.1e-23 114.0 204 65.2
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 6.9e-23 113.2 230 55.2
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 9.1e-23 112.8 224 57.6
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.2e-22 112.5 225 60.9
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.2e-22 112.5 201 67.7
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.6e-22 111.3 200 64.5
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.4e-22 110.9 211 32.2
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 3.4e-22 110.9 215 66.5
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 4.5e-22 110.5 233 57.5
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 5.9e-22 110.2 209 59.8
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 5.9e-22 110.2 231 62.8
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 5.9e-22 110.2 234 56.4
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 7.7e-22 109.8 69 73.9
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 7.7e-22 109.8 211 38.4
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.7e-21 108.6 227 58.6
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-21 108.2 203 65.0
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-21 108.2 203 65.0
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-21 108.2 203 64.5
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 2.2e-21 108.2 226 55.3
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 2.2e-21 108.2 211 57.8
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 2.2e-21 108.2 209 58.9
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 2.2e-21 108.2 207 67.6
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-21 107.8 203 64.5
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.9e-21 107.8 211 58.3
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.8e-21 107.5 192 62.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 3.8e-21 107.5 190 62.6
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 3.8e-21 107.5 206 69.9
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 5.0e-21 107.1 211 57.3
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 5.0e-21 107.1 211 57.3
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 5.0e-21 107.1 211 57.3
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 5.0e-21 107.1 212 31.6
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 6.5e-21 106.7 209 57.9
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 8.5e-21 106.3 187 63.6
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 1.1e-20 105.9 203 70.9
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 1.1e-20 105.9 203 70.9
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.1e-20 105.9 188 68.6
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.1e-20 105.9 203 62.1
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.4e-20 105.5 209 57.9
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.4e-20 105.5 209 57.9
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.4e-20 105.5 209 58.4
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.4e-20 105.5 219 66.2
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 2.5e-20 104.8 212 32.1
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.5e-20 104.8 209 57.9
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.5e-20 104.8 209 57.9
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.5e-20 104.8 205 60.0
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.5e-20 104.8 203 60.6
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 3.2e-20 104.4 185 66.5
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.2e-20 104.4 205 59.5
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.2e-20 104.4 202 61.4
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 3.2e-20 104.4 200 64.5
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.2e-20 104.0 188 68.1
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 5.5e-20 103.6 209 57.4
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.5e-20 103.6 187 66.8
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 9.4e-20 102.8 201 31.3
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 1.2e-19 102.4 218 61.5
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-19 102.4 186 68.8
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.6e-19 102.1 203 60.1
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 1.6e-19 102.1 201 63.2
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.6e-19 102.1 193 60.1
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.1e-19 101.7 203 59.6
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 2.7e-19 101.3 203 63.1
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 3.6e-19 100.9 223 55.6
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 4.7e-19 100.5 207 55.6
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.7e-19 100.5 190 69.5
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 7.9e-19 99.8 225 60.9
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.0e-18 99.4 186 62.4
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.8e-18 98.6 201 60.2
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 2.3e-18 98.2 194 62.4
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 3.9e-18 97.4 217 59.9
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 6.7e-18 96.7 203 60.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 6.7e-18 96.7 221 57.9
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 8.8e-18 96.3 229 35.8
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 8.8e-18 96.3 198 59.6
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 8.8e-18 96.3 198 61.1
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.6e-17 94.7 177 68.9
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 4.4e-17 94.0 227 56.4
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 5.7e-17 93.6 186 64.5
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 7.4e-17 93.2 229 57.2
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 9.7e-17 92.8 220 61.4
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 9.7e-17 92.8 202 61.9
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.3e-16 92.4 193 30.6
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.3e-16 92.4 185 31.4
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.7e-16 92.0 203 55.7
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 2.2e-16 91.7 193 71.5
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 6.3e-16 90.1 226 52.7
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 8.2e-16 89.7 230 60.0
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 1.4e-15 89.0 186 69.4
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.4e-15 89.0 243 55.1
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 1.8e-15 88.6 226 54.0
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.8e-15 88.6 218 32.6
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 1.8e-15 88.6 218 63.8
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.1e-15 87.8 220 51.8
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 4.1e-15 87.4 197 57.9
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 7.0e-15 86.7 56 69.6
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 7.0e-15 86.7 220 36.8
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 7.0e-15 86.7 200 69.5
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.5e-14 85.5 172 66.3
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 2.6e-14 84.7 63 60.3
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.6e-14 84.7 229 52.8
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 4.5e-14 84.0 226 49.6
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.5e-14 84.0 225 53.8
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.9e-14 83.6 220 50.0
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.0e-13 82.8 223 51.1
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.0e-13 82.8 165 62.4
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-13 82.4 191 53.4
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.3e-13 82.4 229 48.9
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.3e-13 82.4 202 56.4
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.3e-13 82.4 52 75.0
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 1.3e-13 82.4 185 53.0
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.3e-13 82.4 54 70.4
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 6.5e-13 80.1 217 28.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 8.5e-13 79.7 202 55.9
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.9e-12 78.6 188 56.9
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.2e-12 77.8 191 52.4
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 5.5e-12 77.0 69 52.2
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 7.2e-12 76.6 187 27.8
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.7e-11 74.7 188 55.9
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.7e-11 74.7 188 55.9
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 3.6e-11 74.3 203 54.7
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 4.7e-11 73.9 52 67.3
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 8.0e-11 73.2 166 62.7
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 8.0e-11 73.2 63 55.6
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.4e-10 72.4 69 49.3
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.4e-10 72.4 69 50.7
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 1.8e-10 72.0 162 32.1
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 5.2e-10 70.5 90 47.8
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.7e-10 70.1 187 39.0
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 6.7e-10 70.1 215 48.8
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 6.7e-10 70.1 98 44.9
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.1e-09 69.3 66 51.5
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 1.1e-09 69.3 88 40.9
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.0e-09 68.6 189 32.8
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 2.6e-09 68.2 91 44.0
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.6e-09 68.2 187 39.6
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 3.3e-09 67.8 178 57.9
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 3.3e-09 67.8 185 35.1
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 3.3e-09 67.8 167 64.1
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.7e-09 67.0 118 35.6
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 5.7e-09 67.0 186 55.9
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 7.4e-09 66.6 95 40.0
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.7e-08 65.5 52 57.7
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.8e-08 64.7 90 42.2
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 3.7e-08 64.3 43 69.8
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 8.2e-08 63.2 186 52.7
MD02G1045000 Malus domestica HOM05D003689 ORTHO05D003950 1.1e-07 62.8 42 61.9
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.4e-07 62.4 41 68.3
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 2.4e-07 61.6 185 57.3
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 2.4e-07 61.6 186 51.1
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.4e-07 61.6 186 51.1
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 4.1e-07 60.8 52 51.9
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 9.1e-07 59.7 87 34.5
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 2.6e-06 58.2 70 41.4
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.6e-06 58.2 185 51.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 2.6e-06 58.2 51 49.0
SEGI_12691 Sequoiadendron giganteum HOM05D003689 ORTHO05D003950 7.7e-06 56.6 102 38.2


User provided reference genes

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