Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 0.0e+00 1442.2 711 100.0
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1258.0 684 89.0
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1255.0 683 88.7
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1215.3 713 83.9
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1207.2 713 82.2
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1170.2 711 79.3
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1168.7 714 78.6
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1167.9 714 78.6
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1166.0 714 79.0
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1164.4 712 78.4
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1164.1 714 78.4
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1162.9 713 77.7
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1162.9 714 78.4
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1159.1 714 77.9
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1158.3 713 78.1
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1157.9 712 77.7
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1156.0 714 78.0
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1155.6 712 77.7
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1155.2 714 77.9
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1154.0 721 78.4
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1153.7 714 78.7
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1151.7 713 77.8
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1151.7 713 78.0
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1151.7 713 77.3
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1151.0 714 78.6
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1149.0 714 78.6
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1148.7 711 77.2
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1147.9 713 77.3
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1147.1 714 76.8
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1146.7 714 78.3
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1146.0 713 79.0
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1144.8 714 76.3
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1144.0 713 77.4
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1143.6 714 78.9
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1142.1 714 76.6
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1141.3 713 77.3
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1140.2 714 77.3
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1137.9 713 77.4
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1135.9 715 77.5
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1135.2 714 76.2
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1133.2 711 76.4
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1132.9 713 77.3
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1132.5 714 76.2
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1131.7 715 76.8
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1130.9 714 75.6
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1130.5 663 81.1
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1130.2 683 78.8
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1129.4 714 75.9
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1129.4 712 76.1
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1127.9 682 78.2
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1127.5 715 77.9
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1127.1 714 76.2
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1126.3 715 76.1
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1125.5 715 77.3
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1125.2 711 78.3
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1123.6 714 75.5
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1123.6 713 76.3
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1122.5 682 78.2
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1121.3 685 77.4
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1120.9 713 76.0
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1116.3 722 75.8
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1115.1 709 76.6
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1115.1 722 75.5
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1115.1 715 77.1
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1114.8 714 74.2
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1114.0 713 76.0
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1112.4 710 74.8
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1111.7 684 77.5
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1110.9 712 75.3
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1110.5 708 75.7
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1110.5 710 74.9
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1109.0 710 74.8
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1108.6 710 74.6
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1107.8 710 74.8
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1107.8 712 74.4
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1106.3 710 75.4
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1105.1 699 75.4
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1104.7 710 74.5
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1103.2 717 75.3
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1101.3 720 73.8
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1099.3 720 74.6
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1096.3 696 74.4
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1088.6 714 74.1
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1085.5 710 74.1
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1083.6 693 75.3
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1079.3 727 72.9
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 9.7e-312 1072.8 631 81.0
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 3.1e-309 1064.7 713 73.9
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 4.1e-309 1064.3 684 73.0
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 1.5e-308 1062.4 663 76.6
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 2.2e-307 1058.5 664 76.5
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.6e-305 1052.4 680 73.5
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.1e-305 1052.0 662 76.9
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 6.7e-304 1047.0 707 72.7
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.1e-303 1046.2 714 72.1
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 5.5e-298 1027.3 661 75.5
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 2.1e-297 1025.4 655 76.6
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 3.0e-296 1021.5 648 76.1
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 6.7e-296 1020.4 717 68.5
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 1.2e-289 999.6 664 73.8
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 1.0e-288 996.5 649 74.0
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 1.1e-285 986.5 646 74.3
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 4.7e-281 971.1 674 69.3
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 2.3e-280 968.8 711 67.5
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 1.5e-266 922.9 678 65.0
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 1.0e-264 916.8 788 59.5
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 8.9e-256 887.1 594 68.9
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 3.3e-242 842.0 663 64.9
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 4.3e-242 841.6 695 60.1
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 6.8e-240 834.3 554 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 1.3e-222 776.9 479 74.7
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 1.0e-219 767.3 587 61.8
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 7.6e-215 751.1 597 63.8
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.5e-204 715.7 411 81.8
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 1.1e-194 684.1 626 54.2
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 1.3e-190 670.6 511 67.3
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 3.3e-186 656.0 550 56.7
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 5.0e-182 642.1 592 52.4
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 1.9e-165 587.0 478 62.1
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 5.5e-165 585.5 489 61.8
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 9.7e-69 265.8 641 32.4
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 8.0e-55 219.5 118 90.7
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 1.2e-53 215.7 122 85.2
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 4.4e-53 213.8 213 52.1
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.1e-51 207.6 108 93.5
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.1e-51 207.6 108 93.5
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.1e-51 207.6 108 93.5
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.1e-51 207.6 108 93.5
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 9.1e-51 206.1 108 92.6
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.7e-50 204.5 108 92.6
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-49 199.5 102 95.1
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 1.0e-46 192.6 124 75.8
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 2.2e-44 184.9 126 63.5
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 3.0e-38 164.5 143 59.4
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 8.6e-33 146.4 129 59.7
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 4.7e-31 140.6 122 60.7
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 1.0e-30 139.4 142 49.3
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 2.7e-26 124.8 100 65.0
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 6.6e-25 120.2 226 35.4
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 8.1e-23 113.2 53 96.2
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 3.1e-22 111.3 52 98.1
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 3.1e-22 111.3 52 98.1
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 3.1e-22 111.3 52 98.1
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 6.8e-22 110.2 52 98.1
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 5.2e-14 84.0 45 86.7
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 9.2e-11 73.2 45 75.6
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 3.5e-10 71.2 61 52.5
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 1.0e-09 69.7 163 31.9
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-09 68.6 34 82.4
Ciclev10018942m.g Citrus clementina HOM05D000015 ORTHO05D001173 9.0e-06 56.6 110 39.1


User provided reference genes

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