Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.5e-30 134.0 72 100.0
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 4.5e-14 80.9 51 84.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.7e-13 79.0 51 80.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.2e-13 78.6 60 71.7
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.9e-13 78.2 52 84.6
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.9e-13 78.2 51 80.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 3.8e-13 77.8 60 71.7
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 5.0e-13 77.4 51 80.4
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.5e-13 77.0 51 78.4
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 8.5e-13 76.6 57 71.9
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.1e-12 76.3 51 76.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.4e-12 75.9 51 78.4
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.4e-12 75.9 57 71.9
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.9e-12 75.5 57 70.2
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.9e-12 75.5 57 70.2
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.5e-12 75.1 51 74.5
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.5e-12 75.1 51 78.4
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.2e-12 74.3 57 70.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.2e-12 74.3 51 76.5
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 4.2e-12 74.3 57 70.2
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.2e-12 74.3 51 76.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.2e-12 74.3 57 70.2
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 4.2e-12 74.3 51 76.5
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-12 74.3 51 74.5
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.5e-12 73.9 51 74.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 7.2e-12 73.6 57 68.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.2e-12 73.6 62 64.5
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 9.4e-12 73.2 51 74.5
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 9.4e-12 73.2 57 68.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 9.4e-12 73.2 57 68.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.2e-11 72.8 51 74.5
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-11 72.8 51 72.5
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.2e-11 72.8 49 77.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.6e-11 72.4 57 66.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-11 72.4 51 72.5
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.6e-11 72.4 57 68.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.6e-11 72.4 57 68.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.7e-11 71.6 57 66.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.7e-11 71.6 57 66.7
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 2.7e-11 71.6 51 72.5
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 3.6e-11 71.2 51 72.5
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 3.6e-11 71.2 57 66.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.6e-11 71.2 51 70.6
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.6e-11 70.9 57 64.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 6.1e-11 70.5 58 65.5
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 6.1e-11 70.5 57 68.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 6.1e-11 70.5 51 72.5
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 7.9e-11 70.1 51 70.6
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.0e-10 69.7 51 70.6
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.0e-10 69.7 51 70.6
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-10 69.7 69 58.0
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.0e-10 69.7 51 68.6
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-10 69.3 55 67.3
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.8e-10 68.9 51 70.6
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.8e-10 68.9 47 76.6
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.3e-10 68.6 51 68.6
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-10 68.6 51 68.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-10 68.6 51 68.6
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.3e-10 68.6 46 78.3
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-10 68.6 54 68.5
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.3e-10 68.6 51 72.5
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.0e-10 68.2 57 63.2
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.0e-10 68.2 51 68.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 3.9e-10 67.8 57 64.9
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 3.9e-10 67.8 51 68.6
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-10 67.8 55 65.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.9e-10 67.8 51 66.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.9e-10 67.8 51 66.7
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.9e-10 67.8 58 67.2
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.9e-10 67.8 49 71.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 3.9e-10 67.8 51 68.6
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 5.1e-10 67.4 51 68.6
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.1e-10 67.4 51 68.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 6.7e-10 67.0 53 69.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.8e-10 66.6 55 65.5
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 8.8e-10 66.6 57 64.9
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 8.8e-10 66.6 57 63.2
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.1e-09 66.2 46 73.9
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-09 65.9 57 61.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.5e-09 65.9 51 66.7
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.3e-09 64.7 47 70.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.3e-09 64.7 47 70.2
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-09 64.7 50 70.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 4.3e-09 64.3 47 70.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 4.3e-09 64.3 47 70.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.3e-09 64.3 40 80.0
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.3e-09 64.3 43 74.4
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.3e-09 64.3 47 70.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 5.7e-09 63.9 51 64.7
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 7.4e-09 63.5 46 69.6
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 9.7e-09 63.2 39 82.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 9.7e-09 63.2 46 69.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 9.7e-09 63.2 51 66.7
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 9.7e-09 63.2 43 74.4
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 9.7e-09 63.2 43 72.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.3e-08 62.8 51 64.7
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.7e-08 62.4 40 77.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.7e-08 62.4 47 72.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.2e-08 62.0 41 78.0
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 3.7e-08 61.2 45 68.9
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 3.7e-08 61.2 51 58.8
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.7e-08 61.2 38 81.6
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.7e-08 61.2 38 81.6
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-08 60.8 48 68.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.8e-08 60.8 40 75.0
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 6.3e-08 60.5 43 69.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 6.3e-08 60.5 46 67.4
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 6.3e-08 60.5 49 61.2
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.3e-08 60.5 48 68.8
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 8.2e-08 60.1 47 63.8
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 8.2e-08 60.1 42 73.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 8.2e-08 60.1 43 72.1
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-07 59.7 48 66.7
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.1e-07 59.7 37 81.1
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.4e-07 59.3 47 68.1
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-07 59.3 40 75.0
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.4e-07 58.5 51 64.7
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.4e-07 58.5 36 80.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.4e-07 58.5 36 80.6
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.4e-07 58.5 36 80.6
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.4e-07 58.5 36 80.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.4e-07 58.5 43 67.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.1e-07 57.8 42 69.0
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 4.1e-07 57.8 36 80.6
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.3e-07 57.4 41 70.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.3e-07 57.4 40 72.5
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-07 57.0 39 71.8
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-07 56.6 39 71.8
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-07 56.6 39 71.8
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 9.1e-07 56.6 36 83.3
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.2e-06 56.2 36 77.8
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.2e-06 56.2 38 73.7
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.2e-06 56.2 36 75.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-06 55.8 39 71.8
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.5e-06 55.8 36 77.8
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-06 55.5 40 67.5
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-06 55.5 36 75.0
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-06 55.1 39 69.2
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.6e-06 55.1 35 82.9
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 3.4e-06 54.7 35 77.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.4e-06 54.7 35 74.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.4e-06 54.7 35 74.3
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 7.7e-06 53.5 38 73.7


User provided reference genes

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